- d -

d0_ : core::scoring::TMscore
d0_search_ : core::scoring::TMscore
d1_ : core::scoring::FACTSRsdTypeInfo
d2_ : core::scoring::FACTSRsdTypeInfo
D2_ : core::scoring::func::GaussianChainDoubleFunc , core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainTripleFunc
d2_low_ : core::scoring::methods::LK_BallEnergy
D3_ : core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainTripleFunc
D4_ : core::scoring::func::GaussianChainQuadrupleFunc
d_ : core::chemical::AddConnect , core::chemical::Adduct , core::chemical::AtomICoor , core::chemical::SetICoor , core::kinematics::tree::BondedAtom
D_ : core::scoring::ResidualDipolarCoupling
d_location : core::scoring::disulfides::FullatomDisulfideParams13
d_max : core::scoring::electron_density::ElectronDensity
d_mean : core::scoring::sc::_RESULTS
d_median : core::scoring::sc::_RESULTS
d_min : core::scoring::electron_density::ElectronDensity
d_scale : core::scoring::disulfides::FullatomDisulfideParams13
d_shape : core::scoring::disulfides::FullatomDisulfideParams13
dada : core::scoring::packstat::Circle
data_ : core::fragment::FragData , core::graph::UEEdge< V, E > , core::graph::UEVertex< V, E > , core::pack::dunbrack::cenrot::CentroidRotamerSampleData , core::pack::rotamer_set::WaterPackingInfo , core::scoring::func::CircularGeneral1D_Func , core::scoring::methods::D2H_SA_Energy
data_cache_ : core::conformation::RotamerSetBase , core::pose::Pose , core::scoring::Energies , core::scoring::ResPairMinimizationData , core::scoring::ResSingleMinimizationData
data_line : core::scoring::rna::chemical_shift::ChemicalShiftData
database_ : core::scoring::hbonds::HBondEnergy
database_directory_ : core::chemical::ResidueTypeSet
db_ : core::scoring::methods::CartesianBondedEnergy
dB_dBdnmtr_ : core::scoring::FACTSResidueInfo
dB_dBnmtr_ : core::scoring::FACTSResidueInfo
db_disulfides_ : core::scoring::disulfides::DisulfideMatchingDatabase
db_init_ : core::scoring::disulfides::DisulfideMatchingDatabase
dbg : core::scoring::APBSConfig
dBR_ : core::pack::interaction_graph::FASTERInteractionGraph
dBR_dG_ : core::scoring::FACTSResidueInfo
dbx : core::scoring::APBSResult
dby : core::scoring::APBSResult
dbz : core::scoring::APBSResult
dc_score_ : core::scoring::methods::DipolarCouplingEnergy
dCCdxs_aacen : core::scoring::electron_density::ElectronDensity
dCCdxs_cen : core::scoring::electron_density::ElectronDensity
dCCdxs_pat : core::scoring::electron_density::ElectronDensity
dCCdxs_res : core::scoring::electron_density::ElectronDensity
DCerr_ : core::scoring::DC
dchi2_dca : core::scoring::saxs::FastSAXSEnergy
dchi2_dsc : core::scoring::saxs::FastSAXSEnergy
dchidevpen_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dchidevpen_dchi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dchimean_dphi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dchimean_dpsi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dchisd_dphi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dchisd_dpsi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dcs_kappa1 : core::scoring::disulfides::FullatomDisulfideParams13
dcs_kappa2 : core::scoring::disulfides::FullatomDisulfideParams13
dcs_kappa3 : core::scoring::disulfides::FullatomDisulfideParams13
dcs_logA1 : core::scoring::disulfides::FullatomDisulfideParams13
dcs_logA2 : core::scoring::disulfides::FullatomDisulfideParams13
dcs_logA3 : core::scoring::disulfides::FullatomDisulfideParams13
dcs_mu1 : core::scoring::disulfides::FullatomDisulfideParams13
dcs_mu2 : core::scoring::disulfides::FullatomDisulfideParams13
dcs_mu3 : core::scoring::disulfides::FullatomDisulfideParams13
DCval_ : core::scoring::DC
DCval_computed_ : core::scoring::DC
DDP_lookup_table_ : core::scoring::ScoringManager
dE_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dE_dbb_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dE_dbb_rot_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dE_dbb_semi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dE_dchi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dE_dchi_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dE_dchi_semi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dE_dphi_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dE_dpsi_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dec15_score : core::scoring::packing::HolesResult
decompose_bb_hb_into_pair_energies_ : core::scoring::hbonds::HBondOptions
decoy_params_ : core::scoring::packing::HolesEnergy
decoy_score : core::scoring::packing::HolesResult
decoy_tag_ : core::io::raw_data::RawStruct , core::io::silent::SilentStruct
dEfac_ : core::scoring::etable::coulomb::Coulomb
DEFAULT_APBS_PATH : core::scoring::PoissonBoltzmannPotential
default_commands_ : core::pack::task::ResfileContents
default_value_ : core::id::AtomID_Map< T >
default_weight_ : core::pack::task::IGEdgeReweighter
defined_adducts_ : core::chemical::ResidueType
degeneracy : core::chemical::RingConformer
degenerate_conformers_ : core::chemical::RingConformerSet
deleted_ : core::graph::UEEdge< V, E >
delta2max : core::pose::rna::RNA_SuiteName
delta2min : core::pose::rna::RNA_SuiteName
delta3max : core::pose::rna::RNA_SuiteName
delta3min : core::pose::rna::RNA_SuiteName
delta_atom_names_ : core::scoring::dna::DNATorsionPotential
delta_components_ : core::scoring::dna::DNATorsionPotential
delta_cutoff_ : core::chemical::rna::RNA_FittedTorsionInfo , core::pose::rna::RNA_IdealCoord
DELTA_CUTOFF_ : core::scoring::dna::DNATorsionPotential
delta_energies_unweighted_ : core::pose::metrics::simple_calculators::InterfaceDeltaEnergeticsCalculator
delta_fade_ : core::scoring::rna::RNA_TorsionPotential
delta_north_potential_ : core::scoring::rna::RNA_TorsionPotential
delta_sasa_ : core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
delta_south_potential_ : core::scoring::rna::RNA_TorsionPotential
deltaE_for_substitution_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::SurfaceNode< V, E, G >
deltaE_threshold_for_avoiding_hpatch_calcs_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
deltaE_threshold_for_avoiding_surface_calcs_ : core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G >
dens_max : core::scoring::electron_density::ElectronDensity
dens_mean : core::scoring::electron_density::ElectronDensity
dens_min : core::scoring::electron_density::ElectronDensity
dens_stdev : core::scoring::electron_density::ElectronDensity
density : core::scoring::electron_density::ElectronDensity , core::scoring::electron_density_atomwise::ElectronDensityAtomwise , core::scoring::sc::Atom , core::scoring::sc::MolecularSurfaceCalculator
DensScoreInMinimizer : core::scoring::electron_density::ElectronDensity
dentropy_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dep_day_ : core::io::pdb::HeaderInformation
dep_month_ : core::io::pdb::HeaderInformation
dep_year_ : core::io::pdb::HeaderInformation
dependent_dof_nodes_ : core::optimization::symmetry::SymMinimizerMap
depth : core::conformation::membrane::EmbedConfigInfo
depth_ : core::conformation::membrane::MembraneInfo , core::optimization::DOF_Node , core::scoring::MembraneEmbed , core::scoring::MembraneTopology
deriv_check_ : core::optimization::AtomTreeMultifunc , core::optimization::CartesianMultifunc , core::optimization::MinimizerOptions , core::optimization::symmetry::SymAtomTreeMultifunc
deriv_check_result_ : core::optimization::AtomTreeMinimizer , core::optimization::AtomTreeMultifunc , core::optimization::CartesianMinimizer , core::optimization::CartesianMultifunc
deriv_check_results_ : core::optimization::NumericalDerivCheckResult
deriv_check_to_stdout_ : core::optimization::MinimizerOptions
deriv_check_verbose_ : core::optimization::AtomTreeMultifunc , core::optimization::CartesianMultifunc , core::optimization::MinimizerOptions , core::optimization::symmetry::SymAtomTreeMultifunc
deriv_phi_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData
deriv_psi_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData
deriv_type2name_ : core::scoring::hbonds::HBondTypeManager
derivative_atom_types_ : core::scoring::disulfides::DisulfideAtomIndices
derivative_graph_ : core::scoring::symmetry::SymmetricEnergies
derivs_ : core::scoring::hbonds::HBond
design_disabled_ : core::pack::task::ResidueLevelTask_
designing_ : core::pack::task::ResidueLevelTask_
desired_result_ : core::chemical::ResidueSelectorSingle
destruction_obs_hub_ : core::pose::Pose
dfade_max_ : core::scoring::hbonds::FadeInterval
dfade_min_ : core::scoring::hbonds::FadeInterval
dG_dCi_ : core::scoring::FACTSResidueInfo
dhist_ : core::scoring::saxs::SAXSEnergy
DHO_Haro_scOrbH_splines_ : core::scoring::orbitals::OrbitalsLookup
DHO_Hpol_bbOrbH_splines_ : core::scoring::orbitals::OrbitalsLookup
DHO_Hpol_scOrbH_splines_ : core::scoring::orbitals::OrbitalsLookup
Di_ : core::scoring::FACTSResidueInfo
die_ : core::scoring::etable::coulomb::Coulomb
dihedral_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData
dihedral_atom_sets_ : core::chemical::ResidueType
dihedral_constraint_energy_ : core::scoring::constraints::ConstraintEdge
dihedrals_for_atom_ : core::chemical::ResidueType
dime : core::scoring::APBSConfig
dimer1_ : core::scoring::DimerPairing
dimer2_ : core::scoring::DimerPairing
dimer_neighbor : core::scoring::Strands
dip_score_ : core::scoring::methods::ResidualDipolarCouplingEnergy , core::scoring::methods::ResidualDipolarCouplingEnergyRigidSegments
directory_ : core::chemical::AtomTypeSet , core::chemical::orbitals::OrbitalTypeSet
dis2_step_ : core::scoring::etable::TableLookupEvaluator
disable_polar_desolvation : core::scoring::etable::EtableOptions
disabled_ : core::pack::task::ResidueLevelTask_
disallow_quench_ : core::pack::annealer::SimAnnealerBase , core::pack::task::PackerTask_
disallowed_aas_ : core::pack::task::operation::DisallowIfNonnative , core::pack::task::operation::DisallowIfNonnativeRLT
disallowed_resids_ : core::pack::task::operation::OptH
dist_cut2_ : core::scoring::geometric_solvation::GeometricSolEnergyEvaluator
dist_cutoff2_ : core::scoring::rna::RNA_FullAtomStackingEnergy
dist_cutoff_ : core::scoring::rna::RNA_DataBackboneEnergy , core::scoring::rna::RNA_FullAtomStackingEnergy
dist_fade_ : core::scoring::rna::RNA_DataBackboneEnergy
dist_pow : core::pose::rna::RNA_SuiteName
distance : core::scoring::sc::_RESULTS
distance_ : core::chemical::Bond , core::chemical::orbitals::ICoorOrbitalData , core::chemical::orbitals::OrbitalType , core::pack::dunbrack::cenrot::CentroidRotamerSampleData , core::pack::task::operation::RestrictToInterface , core::pack::task::residue_selector::NeighborhoodResidueSelector
distance_cutoff_ : core::pack::task::residue_selector::NumNeighborsSelector
distance_squared : core::scoring::etable::AtomPairEnergy
distance_table_ : core::scoring::methods::GoapEnergy
distbin_map_ : core::scoring::methods::GoapEnergy
distinguish_backbone_and_sidechain_ : core::pack::interaction_graph::OnTheFlyNode , core::pack::interaction_graph::SymmOnTheFlyNode
disulf_atom_index_ : core::scoring::disulfides::DisulfideAtomIndices
disulf_ssdist_cutoff_ : core::scoring::disulfides::FullatomDisulfidePotential
disulfide_atom_indices_ : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
disulfide_cb_dist_cutoff : core::scoring::disulfides::CentroidDisulfidePotential
disulfide_index_ : core::scoring::disulfides::CentroidDisulfideNeighborConstIterator , core::scoring::disulfides::CentroidDisulfideNeighborIterator , core::scoring::disulfides::DisulfideMatchingNeighborConstIterator , core::scoring::disulfides::DisulfideMatchingNeighborIterator , core::scoring::disulfides::DisulfResNeighbConstIterator , core::scoring::disulfides::DisulfResNeighbIterator
disulfide_info_ : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
disulfide_matching_potential_ : core::scoring::ScoringManager
disulfide_partners_ : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
disulfide_residue_types_ : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
disulfides_ : core::io::raw_data::DisulfideFile
djs_id_2_hphobe_index_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
djs_rep_node_index_2_cc_index_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
dlazy_edge_vector_ : core::pack::interaction_graph::DoubleLazyInteractionGraph
dlig_mem_limit_ : core::pack::task::PackerTask_
dljatr_ : core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::etable::Etable , core::scoring::etable::TableLookupEvaluator , core::scoring::rna::RNA_LJ_BaseEnergy
dljrep_ : core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::etable::Etable , core::scoring::etable::TableLookupEvaluator , core::scoring::rna::RNA_LJ_BaseEnergy
dm_ : core::scoring::cryst::PhenixInterface
dml_dx : core::scoring::cryst::XtalMLEnergy
dna_base_distance_constraints_ : core::scoring::dna::DNATorsionEnergy
DNA_base_potential_ : core::scoring::ScoringManager
dna_dr_potential_ : core::scoring::ScoringManager
dna_sugar_close_constraints_ : core::scoring::dna::DNATorsionEnergy
dna_torsion_constraints_ : core::scoring::dna::DNATorsionEnergy
dna_torsion_potential_ : core::scoring::dna::DNATorsionEnergy , core::scoring::ScoringManager
dnabform_ : core::scoring::ScoringManager
dneglnrotprob_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
dnmtr_ : core::scoring::FACTSResidueInfo
do_apprx_ : core::scoring::FACTSPotential
DOA_orb_orb_splines_ : core::scoring::orbitals::OrbitalsLookup
dof_change_propagates_to_younger_siblings_ : core::kinematics::tree::BondedAtom
dof_changeset_ : core::kinematics::AtomTree
dof_constraints_ : core::scoring::constraints::ConstraintSet
dof_deriv_1benmeths_ : core::scoring::MinimizationNode
dof_deriv_2benmeths_ : core::scoring::MinimizationNode
dof_id2torsion_id_ : core::optimization::symmetry::SymMinimizerMap
dof_id_ : core::id::DOF_ID_Range , core::optimization::DOF_DataPoint , core::scoring::constraints::DOF_Constraint
dof_id_map_ : core::kinematics::MoveMap
dof_map_ : core::id::DOF_ID_Map< T >
dof_mask_ : core::pack::scmin::AtomTreeSCMinMinimizerMap
dof_moved_ : core::conformation::Conformation
dof_node_pointer_ : core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap
dof_nodes_ : core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap , core::pack::scmin::AtomTreeSCMinMinimizerMap
dof_refold_index_ : core::kinematics::tree::Atom_
dof_start_for_focused_residue_ : core::pack::scmin::AtomTreeSCMinMinimizerMap
dof_step_data_ : core::optimization::NumDerivCheckData
dof_type_map_ : core::kinematics::MoveMap
dof_val_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
dofid_to_atoms_ : core::pack::scmin::CartSCMinMinimizerMap
dofname2jnum_ : core::conformation::symmetry::SymmetryInfo
dofs_ : core::conformation::symmetry::SymmData , core::conformation::symmetry::SymmetryInfo
domain_map_ : core::optimization::CartesianMinimizerMap , core::optimization::MinimizerMap , core::optimization::symmetry::SymMinimizerMap , core::pack::scmin::CartSCMinMinimizerMap , core::pack::scmin::SCMinMinimizerMap , core::scoring::Energies , core::scoring::NeighborList
domain_visited_ : core::scoring::loop_graph::LoopGraph
dominant_ : core::conformation::ResidueKinWriter
dominant_suites : core::pose::rna::RNA_SuiteName
don_chem_type2name_ : core::scoring::hbonds::HBondTypeManager
don_deriv : core::scoring::hbonds::HBondDerivs
don_hatm_ : core::scoring::hbonds::HBond
don_hatm_is_backbone_ : core::scoring::hbonds::HBond
don_hatm_is_protein_backbone_ : core::scoring::hbonds::HBond
don_res_ : core::scoring::hbonds::HBond
don_res_is_dna_ : core::scoring::hbonds::HBond
don_res_is_protein_ : core::scoring::hbonds::HBond
don_strength_lookup_ : core::scoring::hbonds::HBondDatabase
don_type_ : core::scoring::hbonds::HBEvalTuple
donor_occ_data_ : core::scoring::geometric_solvation::DatabaseOccSolEne
dont_compute_cav_balls : core::scoring::packstat::SasaOptions
dot_coords_ : core::pack::interaction_graph::RotamerDots
dots : core::scoring::sc::_RESULTS , core::scoring::sc::MolecularSurfaceCalculator
dots_coverage_count_ : core::pack::interaction_graph::DotSphere
double_lazy_ig_ : core::pack::task::PackerTask_
downstream_stub_atoms_ : core::fragment::DownJumpSRFD
Dphi_ : core::scoring::func::KarplusFunc
drdz : core::scoring::packstat::Circle
drotprob_dbb_ : core::pack::dunbrack::RotamerLibraryScratchSpace
ds_ : core::scoring::SecondaryStructurePotential
dSA_dDi_ : core::scoring::FACTSResidueInfo
dsecox_ : core::pack::dunbrack::BBDepScoreInterpData
dsecoxy_ : core::pack::dunbrack::BBDepScoreInterpData
dsecoxyz_ : core::pack::dunbrack::BBDepScoreInterpData
dsecoxz_ : core::pack::dunbrack::BBDepScoreInterpData
dsecoy_ : core::pack::dunbrack::BBDepScoreInterpData
dsecoyz_ : core::pack::dunbrack::BBDepScoreInterpData
dsecoz_ : core::pack::dunbrack::BBDepScoreInterpData
dshift2_bb_ : core::scoring::FACTSPotential
dshift2_bs_ : core::scoring::FACTSPotential
dshift2_saltbridge_ : core::scoring::FACTSPotential
dshift2_sc_ : core::scoring::FACTSPotential
dslf_ca_dih_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
dslf_cbs_ds_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
dslf_cs_ang_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
dslf_fa13_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
dslf_ss_dih_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
dslf_ss_dst_ : core::scoring::disulfides::FullatomDisulfideEnergyComponents
dslfc_ang_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
dslfc_bb_dih_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
dslfc_cb_dih_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
dslfc_cb_dst_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
dslfc_cen_dst_ : core::scoring::disulfides::CentroidDisulfideEnergyComponents
dslfc_rot_ : core::scoring::disulfides::DisulfideMatchingEnergyComponents
dslfc_RT_ : core::scoring::disulfides::DisulfideMatchingEnergyComponents
dslfc_trans_ : core::scoring::disulfides::DisulfideMatchingEnergyComponents
dsolv1_ : core::scoring::etable::Etable , core::scoring::etable::MembEtable , core::scoring::methods::Fa_MbsolvEnergy , core::scoring::methods::LK_BallEnergy , core::scoring::methods::LK_hack
dsolv2_ : core::scoring::etable::MembEtable , core::scoring::methods::Fa_MbsolvEnergy
dsolv_ : core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::etable::Etable , core::scoring::etable::TableLookupEvaluator , core::scoring::methods::Fa_MbsolvEnergy
dsolv_dBR_ : core::scoring::FACTSResidueInfo
dsq_ : core::conformation::PointGraphEdgeData
dsqr_ : core::scoring::EnergyEdge
dss_kappa1 : core::scoring::disulfides::FullatomDisulfideParams13
dss_kappa2 : core::scoring::disulfides::FullatomDisulfideParams13
dss_logA1 : core::scoring::disulfides::FullatomDisulfideParams13
dss_logA2 : core::scoring::disulfides::FullatomDisulfideParams13
dss_mu1 : core::scoring::disulfides::FullatomDisulfideParams13
dss_mu2 : core::scoring::disulfides::FullatomDisulfideParams13
dssp_secstruct_ : core::scoring::dssp::Dssp
dsurf : core::scoring::packing::SurfVolDeriv
dtable_ : core::coarse::CoarseEtable
dummy_ : core::scoring::dna::DNABFormPotential
DUMMY_CONFORMER : core::chemical::RingConformerSet
dummy_deriv : core::scoring::rna::RNA_LowResolutionPotential
dummy_distance : core::scoring::GenBornPotential
dummy_distance_ : core::scoring::FACTSPotential
dummy_radius : core::scoring::GenBornPotential
dummy_radius_ : core::scoring::FACTSPotential
dummy_sample_ : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary
dummy_scale : core::scoring::GenBornPotential
dummy_scale_ : core::scoring::FACTSPotential
dun02_ : core::pack::dunbrack::SingleResidueDunbrackLibrary
dun10 : core::init::pre_talaris_2013_behavior_settings
dvol : core::scoring::packing::SurfVolDeriv
dweight_ : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
dx : core::scoring::APBSResult , core::scoring::packstat::LR_AtomData , core::scoring::packstat::LR_MP_AtomData
dx_filename_ : core::scoring::PoissonBoltzmannPotential
dy : core::scoring::APBSResult , core::scoring::packstat::LR_AtomData , core::scoring::packstat::LR_MP_AtomData
dz : core::scoring::APBSResult