- e -

E_elec_ : core::scoring::FACTSResidueInfo
E_solv_ : core::scoring::FACTSResidueInfo
E_solv_pair_ : core::scoring::FACTSResidueInfo
E_solv_self_ : core::scoring::FACTSResidueInfo
e_to_t : core::chemical::sdf::elementToType
edge1 : core::scoring::rna::Base_pair
edge2 : core::scoring::rna::Base_pair
edge_ : core::graph::EdgeListElement , core::scoring::rna::RNA_Datum
edge_count : core::kinematics::FoldTree
edge_index_ : core::pack::interaction_graph::DoubleLazyEdge
edge_iter_ : core::scoring::constraints::CstResNeighbConstIterator , core::scoring::constraints::CstResNeighbIterator
edge_list_ : core::graph::Graph , core::kinematics::FoldTree , core::pack::interaction_graph::BackgroundNode< V, E, G >
edge_list_element_pool_ : core::graph::EdgeList , core::graph::Graph
edge_matrix_ptrs_ : core::pack::interaction_graph::DensePDNode , core::pack::interaction_graph::FASTERNode , core::pack::interaction_graph::LazyNode , core::pack::interaction_graph::PDNode
edge_pool_ : core::graph::Graph
edge_reweighters_ : core::pack::task::IGEdgeReweightContainer
edge_vector_ : core::pack::interaction_graph::BackgroundNode< V, E, G >
edge_vector_up_to_date_ : core::pack::interaction_graph::BackgroundNode< V, E, G > , core::pack::interaction_graph::NodeBase
edge_weight_ : core::pack::interaction_graph::EdgeBase
edgeList_ : core::sequence::SequenceCoupling
edgePots_ : core::sequence::SequenceCoupling
eeval_ : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library >
effectiveB : core::scoring::electron_density::ElectronDensity
efforigin : core::scoring::electron_density::ElectronDensity
egen_ : core::fragment::picking_old::concepts::Librarian< Bookmark, ExtentEvaluator, ExtentGenerator, Library >
Ei_ : core::scoring::FACTSResidueInfo
EIG_ : core::scoring::ResidualDipolarCoupling
eit_ : core::fragment::ConstantLengthFragSetIterator_
elec_die_ : core::scoring::methods::EnergyMethodOptions
elec_max_dis_ : core::scoring::methods::EnergyMethodOptions
elec_min_dis : core::init::pre_talaris_2013_behavior_settings
elec_min_dis_ : core::scoring::methods::EnergyMethodOptions
elec_no_dis_dep_die_ : core::scoring::methods::EnergyMethodOptions
elecF2_ : core::scoring::FACTSResidueInfo
electron_configuration_ : core::chemical::Element
electrons_ : core::chemical::ElectronConfiguration
element : core::io::pdb::AtomInformation
element_ : core::chemical::Atom , core::chemical::AtomType , core::chemical::sdf::atomTyper , core::graph::EdgeListConstIterator , core::graph::EdgeListIterator
element_index_ : core::chemical::ElementSet
element_set_ : core::chemical::gasteiger::GasteigerAtomTypeSet
element_set_tag_ : core::chemical::ResidueLoaderOptions
element_sets_ : core::chemical::ChemicalManager
element_type_ : core::chemical::gasteiger::GasteigerAtomTypeData
elements_ : core::chemical::ElementSet , core::chemical::ResidueType , core::chemical::ResidueTypeSet
elt_ : core::scoring::electron_density::poseCoord
emap_ : core::scoring::etable::ResResEnergyInvoker< Evaluator >
embed_info_ : core::membrane::geometry::EmbeddingFactory
embeddings_ : core::membrane::MembraneProteinFactory
embres_map_ : core::conformation::membrane::MembraneInfo
empty_list : core::conformation::symmetry::SymmetryInfo
empty_list_ : core::chemical::AutomorphismIterator
empty_residue_list_ : core::chemical::ResidueTypeSet
empty_rsdcst_ : core::scoring::constraints::ConstraintSet
end : core::fragment::picking_old::concepts::Extent< PageIterator > , core::io::pdb::Field
end1_ : core::scoring::dssp::StrandPairing
end2_ : core::scoring::dssp::StrandPairing
end_ : core::fragment::Frame , core::graph::EdgeList , core::io::serialization::BUFFER , core::scoring::ResRangePredicate
energies_ : core::pose::Pose
energies_are_outdated_ : core::pose::metrics::EnergyDependentCalculator , core::pose::metrics::PoseMetricContainer
energies_not_yet_computed_ : core::scoring::EnergyEdge
energies_updated_since_last_prep_for_simA_ : core::pack::interaction_graph::DensePDEdge , core::pack::interaction_graph::DoubleDensePDEdge , core::pack::interaction_graph::FASTEREdge , core::pack::interaction_graph::PDEdge
energy_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData , core::pack::scmin::SidechainStateAssignment , core::scoring::hbonds::HBond
energy_array_pool_ : core::scoring::EnergyGraph
energy_computed_ : core::scoring::constraints::ConstraintEdge
energy_cut_ : core::import_pose::pose_stream::SilentFilePoseInputStream
energy_edge_pool_ : core::scoring::EnergyGraph
energy_graph_ : core::scoring::Energies
energy_maxima_conformers_ : core::chemical::RingConformerSet
energy_method_options_ : core::scoring::ScoreFunction , core::scoring::ScoreFunctionInfo
energy_minima_conformers_ : core::chemical::RingConformerSet
energy_names_ : core::io::silent::EnergyNames
energy_obs_hub_ : core::pose::Pose
energy_state_ : core::scoring::Energies , core::scoring::methods::PBLifetimeCache
energy_sum_group_membership_ : core::pack::interaction_graph::InteractionGraphBase
energy_top_ : core::pack::annealer::MultiCoolAnnealer
entropy_ : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary , core::pack::dunbrack::RotamerLibraryScratchSpace , core::scoring::methods::ProQ_Energy
entry_2_resid_ : core::scoring::trie::CPDataCorrespondence
enum2name_ : core::pose::datacache::CacheableDataType
enumeration_shell_ : core::scoring::FACTSResidueInfo
env_ : core::scoring::SmoothEnvPairPotential
env_id_ : core::environment::DofPassport
env_log_ : core::scoring::EnvPairPotential
env_pair_potential_ : core::scoring::ScoringManager
envsplines_ : core::scoring::CenRotEnvPairPotential
Ep : core::scoring::GenBornPotential
ep_sasa_for_djs_node_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
eps : core::optimization::DFPMinConvergedFractional
epsilon : core::scoring::etable::Etable , core::scoring::etable::MembEtable
epsilon_ : core::scoring::methods::PoissonBoltzmannEnergy
epsilon_atom_names_ : core::scoring::dna::DNATorsionPotential
epsilon_components_ : core::scoring::dna::DNATorsionPotential
epsilon_north_potential_ : core::scoring::rna::RNA_TorsionPotential
epsilon_south_potential_ : core::scoring::rna::RNA_TorsionPotential
epsilonmax : core::pose::rna::RNA_SuiteName
epsilonmin : core::pose::rna::RNA_SuiteName
eq_type_ : core::scoring::FACTSPotential
error : core::scoring::sc::ShapeComplementarityCalculatorException
esEnergy : core::scoring::APBSResult
esolvE_ : core::scoring::FACTSResidueInfo
etable_ : core::coarse::CoarseEtable , core::scoring::etable::AnalyticEtableEvaluator , core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::methods::Fa_MbsolvEnergy , core::scoring::methods::LK_BallEnergy , core::scoring::methods::LK_hack , core::scoring::rna::RNA_FullAtomVDW_BasePhosphate , core::scoring::rna::RNA_LJ_BaseEnergy
etable_bins_per_A2 : core::scoring::etable::BaseEtableEnergy< Derived >
etable_bins_per_A2_ : core::scoring::etable::TableLookupEvaluator , core::scoring::methods::LK_BallEnergy
etable_disbins : core::scoring::etable::Etable , core::scoring::etable::MembEtable
etable_energy_ : core::scoring::rna::RNA_FullAtomVDW_BasePhosphate
etable_evaluator_ : core::scoring::methods::LK_PolarNonPolarEnergy
etable_options_ : core::scoring::methods::EnergyMethodOptions
etable_type_ : core::scoring::methods::EnergyMethodOptions
etables_by_method_ : core::scoring::ScoringManager
etables_by_string_ : core::scoring::ScoringManager
EV_ : core::scoring::ResidualDipolarCoupling
eval_res_ : core::scoring::methods::GoapEnergy
eval_tuple_ : core::scoring::hbonds::HBond
eval_type_ : core::scoring::hbonds::HBEvalTuple
eval_types_ : core::pack::interaction_graph::OnTheFlyEdge , core::pack::interaction_graph::SymmOnTheFlyEdge
evaluator_ : core::scoring::etable::ResResEnergyInvoker< Evaluator > , core::scoring::geometric_solvation::ContextIndependentGeometricSolEnergy , core::scoring::geometric_solvation::GeometricSolEnergy
evdw : core::scoring::packstat::CavityBall
events_ : core::scoring::packstat::Slice
Ew : core::scoring::GenBornPotential
ex1_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex1_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex1aro_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex1aro_exposed_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex1aro_exposed_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex1aro_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex2_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex2_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex2aro_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex2aro_exposed_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex2aro_exposed_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex2aro_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex3_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex3_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex4_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex4_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
ex_chi_steps : core::pack::dunbrack::ChiSet
ex_cutoff_ : core::pack::task::EX_CUTOFF
exact_occ_include_Hbond_contribution_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
exact_occ_pairwise_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
exact_occ_pairwise_by_res_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
exact_occ_self_res_occ_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
exact_occ_skip_Hbonders_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
exact_occ_split_between_res_ : core::scoring::geometric_solvation::ExactOccludedHbondSolEnergy
ExactDerivatives : core::scoring::electron_density::ElectronDensity
exclude_DNA_DNA : core::scoring::etable::BaseEtableEnergy< Derived >
exclude_DNA_DNA_ : core::scoring::elec::FA_ElecEnergy , core::scoring::hbonds::HBondOptions , core::scoring::methods::EnergyMethodOptions , core::scoring::methods::FACTSEnergy , core::scoring::methods::GenBornEnergy
exclude_monomer_ : core::scoring::elec::FA_ElecEnergy
exclude_monomer_fa_elec_ : core::scoring::methods::EnergyMethodOptions
exclude_polar_all_in_hsasa_ : core::scoring::sasa::SasaCalc
exclude_protein_protein_ : core::scoring::elec::FA_ElecEnergy
exclude_protein_protein_fa_elec_ : core::scoring::methods::EnergyMethodOptions
exclude_self_hbonds_ : core::scoring::hbonds::HBondOptions
excluded_ : core::scoring::ExcludedResPredicate
exdna_sample_level_ : core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
exhphobe_index_ : core::pack::interaction_graph::exposed_hydrophobic_data
exit_if_missing_heavy_atoms_ : core::io::pdb::FileDataOptions
EXP_chem_shift_data_list_ : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
exp_param_ : core::scoring::func::MixtureFunc
exp_shift : core::scoring::rna::chemical_shift::ChemicalShiftData
exp_val_ : core::scoring::func::SplineFunc
expand_st_chi2sampling : core::init::pre_talaris_2013_behavior_settings
experimental_technique_in_progress_ : core::io::pdb::HeaderInformation
experimental_techniques_ : core::io::pdb::HeaderInformation
expid_ : core::scoring::RDC
explicit_radii_set_ : core::scoring::sasa::SasaCalc
exposed_radius : core::scoring::packstat::CavityBall
exprdc_ : core::scoring::ResidualDipolarCoupling
extended_data_map_ : core::chemical::sdf::SDFParser
extent_begin : core::fragment::picking_old::concepts::Bookmark< PageConstIterator > , core::fragment::picking_old::vall::scores::VallFragmentScore
extent_end : core::fragment::picking_old::concepts::Bookmark< PageConstIterator > , core::fragment::picking_old::vall::scores::VallFragmentScore
external_coordinate_residues_changed_ : core::kinematics::AtomTree
externally_required_context_graphs_ : core::scoring::Energies
extra_cut_off_interaction_ : core::scoring::FACTSPotential
extra_cut_off_self_ : core::scoring::FACTSPotential
extra_parameter_indices_ : core::chemical::AtomTypeSet
extra_parameters_ : core::chemical::AtomType
extrachi_cutoff_ : core::pack::task::operation::ExtraChiCutoff , core::pack::task::operation::ExtraRotamersGeneric , core::pack::task::ResidueLevelTask_
extrapolated_slope : core::scoring::etable::ExtraQuadraticRepulsion
extrasamples_ : core::chemical::AddProtonChi