- f -

• f00_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• f11_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• F1_ : core::optimization::DOF_Node
• f1_ : core::scoring::DerivVectorPair
• f1ij_ : core::scoring::CSA , core::scoring::DC
• F2 : core::scoring::electron_density::ElectronDensity
• f22_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
• F2_ : core::optimization::DOF_Node
• f2_ : core::scoring::DerivVectorPair
• f2c : core::scoring::electron_density::ElectronDensity , core::scoring::electron_density_atomwise::ElectronDensityAtomwise
• f2ij_ : core::scoring::CSA , core::scoring::DC
• f3ij_ : core::scoring::CSA
• F_s2 : core::scoring::electron_density::ElectronDensity
• FA_ : core::scoring::ResidualDipolarCoupling
• fa_center_ : core::scoring::Membrane_FAEmbed
• fa_cfg_file_ : core::scoring::saxs::SAXSEnergy
• fa_depth_ : core::conformation::membrane::MembraneInfo , core::scoring::Membrane_FAEmbed
• fa_disulfide_potential_ : core::scoring::ScoringManager
• fa_dun_dev_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_rot_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_semi_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_dun_tot_ : core::pack::dunbrack::RotamerLibraryScratchSpace
• fa_mbenv_weight_ : core::scoring::methods::Fa_MbenvEnergy
• fa_mbsolv_weight_ : core::scoring::methods::Fa_MbsolvEnergy
• Fa_Membed_update_ : core::scoring::Membrane_FAEmbed
• fa_penalty_ : core::scoring::Membrane_FAEmbed
• fa_proj_ : core::conformation::membrane::MembraneInfo , core::scoring::Membrane_FAEmbed
• fa_proj_coord_ : core::conformation::membrane::MembraneInfo , core::scoring::Membrane_FAEmbed
• fa_proj_deriv_ : core::conformation::membrane::MembraneInfo , core::scoring::Membrane_FAEmbed
• factor_ : core::scoring::dna::TorsionFourierComponent , core::scoring::saxs::DistanceHistogram
• facts_potential_ : core::scoring::ScoringManager
• FACTSrsdtypemap_ : core::scoring::FACTSPotential
• fadd : core::scoring::APBSConfig
• fade_ : core::scoring::rna::RNA_LowResolutionPotential
• fade_alpha_ap_ : core::scoring::rna::RNA_TorsionPotential
• fade_alpha_sc_minus_ : core::scoring::rna::RNA_TorsionPotential
• fade_alpha_sc_plus_ : core::scoring::rna::RNA_TorsionPotential
• fade_delta_north_ : core::scoring::rna::RNA_SugarCloseEnergy , core::scoring::rna::RNA_TorsionPotential
• fade_delta_south_ : core::scoring::rna::RNA_SugarCloseEnergy , core::scoring::rna::RNA_TorsionPotential
• fade_energy_ : core::scoring::hbonds::HBondOptions
• fade_zone_ : core::scoring::func::FadeFunc
• fasol_cubic_poly1_close : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly1_close_flat : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly1_far : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly2_close : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly2_close_flat : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly2_far : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_close : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_close_end : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_close_flat : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_close_start : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_far : core::scoring::etable::EtableParamsOnePair
• fasol_cubic_poly_far_xhi_ : core::scoring::etable::Etable
• fasol_cubic_poly_far_xlo_ : core::scoring::etable::Etable
• fasol_final_weight : core::scoring::etable::EtableParamsOnePair
• fastdens_score : core::scoring::electron_density::ElectronDensity
• fastgrid : core::scoring::electron_density::ElectronDensity
• fastorigin : core::scoring::electron_density::ElectronDensity
• favor_native_bonus_ : core::scoring::constraints::ResidueTypeConstraint
• favor_non_native_bonus_ : core::scoring::constraints::NonResidueTypeConstraint
• favored_rotamer_numbers_ : core::pack::dunbrack::RotamerConstraint
• favored_rotamers_ : core::pack::dunbrack::RotamerConstraint
• fc_bg_ : core::pack::interaction_graph::exposed_hydrophobic_data
• fc_exp_hphobe_djs_offsets_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_n_exp_hphobes_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_neighbor_map : core::pack::interaction_graph::SurfaceNode< V, E, G >
• fc_node_alt_state_ : core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G >
• fc_node_curr_state_ : core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G >
• fc_nodes_near_rotsub_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fc_nodes_near_rotsub_bool_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
• fcen10_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcen12_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcen6_ : core::scoring::CenListInfo , core::scoring::SigmoidWeightedCenList< T >
• fcenter : core::scoring::APBSConfig
• fd_ : core::import_pose::PDBSilentStruct
• Fdensity : core::scoring::electron_density::ElectronDensity
• Fdrhoc_dx : core::scoring::electron_density::ElectronDensity
• Fdrhoc_dy : core::scoring::electron_density::ElectronDensity
• Fdrhoc_dz : core::scoring::electron_density::ElectronDensity
• ff_manager_ : core::scoring::saxs::SAXSEnergy
• ff_map_ : core::scoring::saxs::FormFactorManager , core::scoring::saxs::SAXSEnergy
• ff_ops_ : core::scoring::saxs::SAXSEnergy
• ff_values_ : core::scoring::saxs::FormFactor
• ff_vector_ : core::scoring::saxs::FormFactorManager
• fglen : core::scoring::APBSConfig
• fij_ : core::scoring::RDC
• file_node_2_instance_node_ : core::pack::interaction_graph::PDInteractionGraph
• file_read_ : core::import_pose::atom_tree_diffs::AtomTreeDiff
• file_vector_ : core::chemical::sdf::SDFParser
• filename : core::io::pdb::FileData
• filename_ : core::io::raw_data::DecoyFileData , core::io::raw_data::DisulfideFile , core::io::raw_data::ScoreFileData , core::io::silent::SilentFileData , core::scoring::func::SplineFunc
• filenames_ : core::import_pose::pose_stream::LazySilentFilePoseInputStream , core::import_pose::pose_stream::PDBPoseInputStream , core::import_pose::pose_stream::SilentFilePoseInputStream
• filled_substitution_history_ : core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::SymmLinearMemNode
• filter_ : core::pack::task::operation::OperateOnCertainResidues
• filter_creator_map_ : core::pack::task::operation::ResFilterFactory
• filtered_base_axis_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_pair_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stack_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stack_axis_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• filtered_base_stagger_array_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• finalized_ : core::chemical::ResidueType
• finalized_energies_ : core::scoring::Energies
• fine_centering_mode : core::scoring::APBSConfig::I_PARAM
• fine_res_type_ : core::coarse::Translator
• first : core::fragment::FragID
• first_atom_in_branch_ : core::scoring::trie::TrieNode< AT, CPDATA >
• first_class_node_ : core::pack::interaction_graph::BackgroundToFirstClassEdge< V, E, G >
• first_class_node_index_ : core::pack::interaction_graph::BackgroundToFirstClassEdge< V, E, G >
• first_nbr_ : core::optimization::ParticleSwarmMinimizer
• first_node_num_states_per_aatype_ : core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< T >
• first_sidechain_hydrogen_ : core::chemical::ResidueType
• first_time_prepping_for_simA_ : core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• first_upper_edge_ : core::graph::Node
• firstRes_ : core::scoring::methods::RG_LocalEnergy
• fitness_ : core::optimization::Particle
• fitness_pbest_ : core::optimization::Particle
• fix_his_tautomer_ : core::pack::task::ResidueLevelTask_
• fixed_ : core::scoring::OneToAllEnergyContainer
• fixed_atom_ : core::scoring::constraints::CoordinateConstraint
• fixed_atom_id_ : core::scoring::constraints::BackboneStubConstraint , core::scoring::constraints::BackboneStubLinearConstraint
• fixed_energies_ : core::scoring::MinimizationGraph
• fixed_reference_point_ : core::scoring::constraints::BackboneStubConstraint , core::scoring::constraints::BackboneStubLinearConstraint
• fixed_residue_ : core::scoring::methods::PoissonBoltzmannEnergy
• fixed_stub_ : core::scoring::constraints::LocalCoordinateConstraint
• flag_for_calculation_ : core::scoring::FACTSResidueInfo
• flip_HNQ_ : core::pack::task::operation::OptH , core::pack::task::ResidueLevelTask_
• fmax_ : core::scoring::func::MixtureFunc , core::scoring::hbonds::FadeInterval
• fmin_ : core::scoring::hbonds::FadeInterval
• fn_ : core::scoring::methods::CustomAtomPairEnergy
• focus_ : core::pack::task::residue_selector::NeighborhoodResidueSelector
• focus_selector_ : core::pack::task::residue_selector::NeighborhoodResidueSelector
• focus_set_ : core::pack::task::residue_selector::NeighborhoodResidueSelector
• focus_str_ : core::pack::task::residue_selector::NeighborhoodResidueSelector
• focused_bg_edge_ : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
• focused_edge_ : core::graph::Graph , core::pack::interaction_graph::InteractionGraphBase
• focused_edge_iterator_ : core::pack::interaction_graph::InteractionGraphBase
• focused_edge_iterator_end_ : core::pack::interaction_graph::InteractionGraphBase
• focused_node_ : core::scoring::constraints::CstResNeighbConstIterator , core::scoring::constraints::CstResNeighbIterator
• focused_residue_ : core::pack::scmin::SCMinMinimizerMap , core::scoring::disulfides::CentroidDisulfideNeighborConstIterator , core::scoring::disulfides::CentroidDisulfideNeighborIterator , core::scoring::disulfides::DisulfideMatchingNeighborConstIterator , core::scoring::disulfides::DisulfideMatchingNeighborIterator , core::scoring::disulfides::DisulfResNeighbConstIterator , core::scoring::disulfides::DisulfResNeighbIterator
• fold_tree_ : core::conformation::Conformation , core::io::silent::BinarySilentStruct , core::io::silent::ProteinSilentStruct_Template< T > , core::io::silent::RNA_SilentStruct , core::io::silent::ScoreJumpFileSilentStruct , core::pose::MiniPose
• fold_tree_io_ : core::import_pose::ImportPoseOptions
• follows : core::kinematics::Node
• force_apix_ : core::scoring::electron_density::ElectronDensity
• force_bb_ : core::chemical::ResidueType
• force_combined_gaussian_approximation_ : core::scoring::func::GaussianChainFunc
• force_constant_ : core::scoring::constraints::BackboneStubConstraint
• force_nbr_atom_orient_ : core::chemical::ResidueType , core::chemical::SetOrientAtom
• formal_charge_ : core::chemical::Atom
• format_ : core::fragment::picking_old::vall::VallResidue
• format_2011_ : core::fragment::picking_old::vall::VallResidue
• frac_cav_ball_required_exposed : core::scoring::packstat::SasaOptions
• fraction_chain1_delta_sasa_ : core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
• fraction_chain2_delta_sasa_ : core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
• frag_cache_ : core::fragment::FragmentIO
• frag_factory_ : core::fragment::FragmentIO
• frag_list_ : core::fragment::Frame
• frag_size_ : core::fragment::picking_old::vall::gen::LengthGen
• frag_types_ : core::fragment::FragFactory
• fragments_ : core::fragment::FragmentRmsd
• fragset_list_ : core::fragment::FragSetCollection
• frame_types_ : core::fragment::FragFactory
• frames_ : core::fragment::ConstantLengthFragSet , core::fragment::FragmentRmsd , core::fragment::OrderedFragSet
• frdc : core::scoring::data_struct
• frdcDa : core::scoring::data_structDa
• frdcDaR : core::scoring::data_structDaR
• frdcR : core::scoring::data_structR
• free_2HOprime_bonus_ : core::scoring::methods::FreeMoietyEnergy
• free_side_chain_bonus_ : core::scoring::methods::FreeMoietyEnergy
• free_sugar_bonus_ : core::scoring::methods::FreeMoietyEnergy
• free_suite_bonus_ : core::scoring::methods::FreeMoietyEnergy
• Frho_calc : core::scoring::electron_density::ElectronDensity
• Frho_solv : core::scoring::electron_density::ElectronDensity
• ft : core::kinematics::TreeVizBuilder
• FULL_ATOM : core::coarse::Rule
• full_model_parameters_ : core::pose::full_model_info::FullModelInfo
• full_name_ : core::chemical::carbohydrates::CarbohydrateInfo
• full_sequence_ : core::pose::full_model_info::FullModelParameters
• full_span_ : core::conformation::membrane::SpanningTopology , core::scoring::MembraneTopology
• full_stack_cutoff_ : core::scoring::rna::RNA_FullAtomStackingEnergy
• fullatom_ : core::conformation::membrane::MembraneInfo , core::io::raw_data::DecoyStruct , core::io::silent::BinarySilentStruct , core::io::silent::ProteinSilentStruct_Template< T > , core::io::silent::RNA_SilentStruct , core::membrane::MembraneProteinFactory
• fully_assigned_mm_bondangle_library_ : core::scoring::mm::MMBondAngleLibrary
• fully_assigned_mm_torsion_library_ : core::scoring::mm::MMTorsionLibrary
• fullyOccupied_ : core::grid::CartGrid< T >
• func_ : core::optimization::DescentDirectionAlgorithm , core::optimization::GA_Minimizer , core::optimization::Minimizer , core::optimization::NelderMeadSimplex , core::scoring::constraints::AmbiguousNMRConstraint , core::scoring::constraints::AmbiguousNMRDistanceConstraint , core::scoring::constraints::AngleConstraint , core::scoring::constraints::AtomPairConstraint , core::scoring::constraints::ConstantConstraint , core::scoring::constraints::CoordinateConstraint , core::scoring::constraints::DihedralConstraint , core::scoring::constraints::DihedralPairConstraint , core::scoring::constraints::DistancePairConstraint , core::scoring::constraints::DOF_Constraint , core::scoring::constraints::LocalCoordinateConstraint , core::scoring::custom_pair_distance::atoms_and_func_struct , core::scoring::custom_pair_distance::resatom_and_func_struct , core::scoring::func::EtableFunc , core::scoring::func::GaussianChainFunc , core::scoring::loop_graph::LoopScoreInfo
• func_factory_ : core::scoring::constraints::ConstraintIO
• func_to_weight_ : core::scoring::func::CountViolFunc , core::scoring::func::ScalarWeightedFunc , core::scoring::func::SkipViolFunc
• func_types_ : core::scoring::func::FuncFactory
• funcs_ : core::scoring::func::SumFunc , core::scoring::methods::CustomAtomPairEnergy