- l -

• l_ : core::environment::LengthChecker , core::scoring::hbonds::SSWeightParameters
• L_ini_ : core::scoring::TMscore
• label : core::pose::PDBInfo::ResidueRecord
• label_ : core::environment::LocalPosition , core::kinematics::Edge
• label_to_pose_numbers_ : core::environment::SequenceAnnotation
• labels : core::scoring::packstat::PosePackData
• landing_atom_ : core::scoring::loop_graph::LoopScoreInfo
• landing_domain_ : core::scoring::loop_graph::Loop
• landing_pos_ : core::scoring::loop_graph::Loop
• last_controlling_chi_ : core::chemical::ResidueType
• last_indep_residue_ : core::conformation::symmetry::SymmetryInfo
• last_nbr_ : core::optimization::ParticleSwarmMinimizer
• last_nonempty_bin_ : core::scoring::saxs::DistanceHistogram
• lastcol : core::scoring::packstat::SimplePDB_Atom
• lastRes_ : core::scoring::methods::RG_LocalEnergy
• lazily_deleted_edges_present_ : core::graph::UEVertex< V, E >
• lazy_ig_ : core::pack::task::PackerTask_
• lb_ : core::kinematics::TreeVizBuilder , core::scoring::constraints::BoundFunc
• ldsrbb_high_scale_ : core::scoring::hbonds::HBondOptions
• ldsrbb_low_scale_ : core::scoring::hbonds::HBondOptions
• ldsrbb_maxlength_ : core::scoring::hbonds::HBondOptions
• ldsrbb_minlength_ : core::scoring::hbonds::HBondOptions
• left_ : core::pack::dunbrack::BBIndNRChiSample< P > , core::scoring::interface_::DDPlookup
• left_ram_probabil_ : core::scoring::Ramachandran2B
• left_rama_sampling_table_ : core::scoring::Ramachandran2B
• left_rama_sampling_table_by_torsion_bin_ : core::scoring::Ramachandran2B
• legacy_ : core::scoring::electron_density::ElectronDensity
• len_h_ : core::scoring::hbonds::SSWeightParameters
• len_l_ : core::scoring::hbonds::SSWeightParameters
• lenex_ : core::scoring::ResidualDipolarCoupling
• length : core::io::pdb::LinkInformation
• length_ : core::environment::SequenceAnnotation , core::scoring::loop_graph::LoopScoreInfo , core::sequence::AnnotatedSequence
• length_change : core::conformation::signals::LengthEvent
• length_dependent_srbb_ : core::scoring::hbonds::HBondOptions
• length_event_link_ : core::pose::datacache::LengthEventCollector , core::pose::datacache::SpecialSegmentsObserver
• length_events_ : core::pose::datacache::LengthEventCollector
• length_obs_hub_ : core::conformation::Conformation
• length_params_ : core::scoring::methods::ResidueCartBondedParameters
• level_ : core::pack::task::operation::ExtraRotamers
• lg_angles_ : core::pack::interaction_graph::RotamerDots
• lg_masks_ : core::pack::interaction_graph::RotamerDots
• libraries_ : core::pack::dunbrack::RotamerLibrary
• libraries_ops_ : core::pack::dunbrack::RotamerLibrary
• limit_ : core::scoring::func::TopOutFunc
• line_header_ : core::chemical::sdf::MolWriter
• linear_bonded_potential_ : core::scoring::methods::CartesianBondedEnergy
• linear_switch_point : core::scoring::mm::MMLJEnergyTable
• linear_weights_ : core::scoring::ProQPotential
• linear_weights_proq2_ : core::scoring::ProQPotential
• lines_ : core::util::ABEGO
• link_map : core::io::pdb::FileData
• links_ : core::pack::rotamer_set::RotamerLinks
• linmem_ig_ : core::pack::task::PackerTask_
• linmem_ig_history_size_ : core::pack::task::PackerTask_
• linmem_ig_history_size_at_default_ : core::pack::task::PackerTask_
• lipid_acc_ : core::membrane::MembraneProteinFactory
• lipid_acc_data_ : core::conformation::membrane::MembraneInfo
• lipid_burial_ : core::conformation::membrane::LipidAccInfo
• lipid_exposure_ : core::conformation::membrane::LipidAccInfo
• LipidBurial_ : core::scoring::MembraneTopology
• LipidExposure_ : core::scoring::MembraneTopology
• LipoDefined_ : core::scoring::MembraneTopology
• list_ : core::fragment::TorsionInfoSet , core::fragment::VectorCacheUnit< T >
• list_file_names_ : core::io::sequence_comparation::DesignContrast
• list_interface_ : core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator
• lj_hbond_accOch_dis : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_hbond_accOch_hdis : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_hbond_dis : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_hbond_hdis : core::init::pre_talaris_2013_behavior_settings , core::scoring::etable::Etable , core::scoring::etable::EtableOptions , core::scoring::etable::MembEtable
• lj_hbond_OH_donor_dis : core::init::pre_talaris_2013_behavior_settings , core::scoring::etable::Etable , core::scoring::etable::EtableOptions
• lj_minimum : core::scoring::etable::EtableParamsOnePair
• lj_r12_coeff : core::scoring::etable::EtableParamsOnePair
• lj_r12_coeff_ : core::scoring::etable::Etable
• lj_r6_coeff : core::scoring::etable::EtableParamsOnePair
• lj_r6_coeff_ : core::scoring::etable::Etable
• lj_radius_ : core::chemical::AtomType , core::chemical::MMAtomType , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_sigma_ : core::scoring::etable::Etable
• lj_slope_intercept : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_switch_dis2sigma : core::scoring::etable::Etable , core::scoring::etable::EtableOptions , core::scoring::etable::MembEtable
• lj_switch_intercept : core::scoring::etable::EtableParamsOnePair
• lj_switch_intercept_ : core::scoring::etable::Etable
• lj_switch_sigma2dis : core::scoring::etable::Etable
• lj_switch_slope : core::scoring::etable::EtableParamsOnePair
• lj_switch_slope_ : core::scoring::etable::Etable
• lj_switch_slope_sigma2wdepth : core::scoring::etable::Etable
• lj_switch_value2wdepth : core::scoring::etable::Etable
• lj_three_bond_radius_ : core::chemical::MMAtomType
• lj_three_bond_wdepth_ : core::chemical::MMAtomType
• lj_use_hbond_radii : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_use_lj_deriv_slope : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_use_water_radii : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_val_at_minimum : core::scoring::etable::EtableParamsOnePair
• lj_water_dis : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_water_hdis : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lj_wdepth_ : core::chemical::AtomType , core::chemical::MMAtomType , core::scoring::etable::Etable
• ljatr_ : core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::etable::Etable , core::scoring::etable::TableLookupEvaluator , core::scoring::rna::RNA_LJ_BaseEnergy
• ljatr_cubic_poly_parameters : core::scoring::etable::EtableParamsOnePair
• ljatr_cubic_poly_xhi : core::scoring::etable::EtableParamsOnePair
• ljatr_cubic_poly_xlo : core::scoring::etable::EtableParamsOnePair
• ljatr_final_weight : core::scoring::etable::EtableParamsOnePair
• ljrep_ : core::scoring::etable::BaseEtableEnergy< Derived > , core::scoring::etable::Etable , core::scoring::etable::TableLookupEvaluator , core::scoring::rna::RNA_LJ_BaseEnergy
• ljrep_extra_repulsion : core::scoring::etable::EtableParamsOnePair
• ljrep_from_negcrossing : core::scoring::etable::EtableParamsOnePair
• ljrep_linear_ramp_d2_cutoff : core::scoring::etable::EtableParamsOnePair
• lk_ball_prefactor_ : core::scoring::methods::LK_BallEnergy
• lk_coeff1 : core::scoring::etable::EtableParamsOnePair
• lk_coeff2 : core::scoring::etable::EtableParamsOnePair
• lk_coeff_ : core::scoring::etable::Etable
• lk_dgfree_ : core::chemical::AtomType , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lk_dgrefce_ : core::scoring::etable::MembEtable , core::scoring::methods::Fa_MbenvEnergy
• lk_hack_weight_ : core::scoring::methods::LK_hack
• lk_inv_lambda2_ : core::scoring::etable::Etable
• lk_lambda_ : core::chemical::AtomType , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lk_min_dis2sigma : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• lk_min_dis2sigma_value : core::scoring::etable::EtableParamsOnePair
• lk_min_dis2sigma_value_ : core::scoring::etable::Etable
• lk_volume_ : core::chemical::AtomType , core::scoring::etable::Etable , core::scoring::etable::MembEtable
• localstrandpair_penalty_ : core::scoring::SecondaryStructureWeights
• log_conc_ : core::scoring::methods::IntermolEnergy
• long_range_damping_length : core::scoring::etable::Etable , core::scoring::etable::MembEtable
• long_range_energies_exist_ : core::pack::interaction_graph::SimpleEdge
• long_range_energy_containers_ : core::scoring::Energies
• long_range_interactions_exist_ : core::pack::interaction_graph::OnTheFlyEdge , core::pack::interaction_graph::SymmOnTheFlyEdge
• lookup_table_ : core::scoring::interface_::DDPlookup , core::scoring::interface_::DDPscore , core::scoring::nv::NVlookup , core::scoring::nv::NVscore , core::scoring::orbitals::OrbitalsScore
• loop_cycles_ : core::scoring::loop_graph::LoopGraph
• loop_fixed_cost_ : core::scoring::func::GaussianChainDoubleFunc , core::scoring::func::GaussianChainFunc , core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainSingleFunc , core::scoring::func::GaussianChainTripleFunc , core::scoring::loop_graph::LoopGraph
• loop_fixed_cost_total_ : core::scoring::func::GaussianChainDoubleFunc , core::scoring::func::GaussianChainQuadrupleFunc , core::scoring::func::GaussianChainSingleFunc , core::scoring::func::GaussianChainTripleFunc
• loop_fraction_ : core::fragment::SecondaryStructure
• loop_graph_ : core::scoring::loop_graph::LoopCloseEnergy
• loop_incident_ : core::graph::Node
• loop_residues_ : core::pack::task::operation::RestrictToInterface
• loop_visited_ : core::scoring::loop_graph::LoopGraph
• loops_ : core::scoring::loop_graph::LoopCycle , core::scoring::loop_graph::LoopGraph
• loops_from_domain_ : core::scoring::loop_graph::LoopGraph
• loopy_interface_ : core::pack::task::operation::RestrictToInterface
• low_EMap_ : core::scoring::constraints::AmbiguousConstraint
• low_poly_ : core::scoring::etable::coulomb::Coulomb
• low_poly_end2_ : core::scoring::etable::coulomb::Coulomb
• low_poly_end_ : core::scoring::etable::coulomb::Coulomb
• low_poly_start2_ : core::scoring::etable::coulomb::Coulomb
• low_poly_start_ : core::scoring::etable::coulomb::Coulomb
• low_temp_ : core::pack::task::PackerTask_
• low_temp_annealing_ : core::pack::annealer::SimAnnealerBase
• low_total_cst_score_ : core::scoring::constraints::AmbiguousConstraint
• lower : core::chemical::sdf::BondData
• lower_bound_ : core::scoring::nv::NVscore , core::scoring::PoissonBoltzmannPotential
• lower_bound_dy_ : core::scoring::func::SplineFunc
• lower_bound_squared_ : core::scoring::nv::NVscore
• lower_bound_x_ : core::scoring::func::SplineFunc
• lower_bound_y_ : core::scoring::func::SplineFunc
• lower_connect_angle_params_ : core::scoring::methods::ResidueCartBondedParameters
• lower_connect_id_ : core::chemical::ResidueType
• lower_range_dof_jumps1_ : core::conformation::symmetry::SymDof
• lower_range_dof_jumps2_ : core::conformation::symmetry::SymDof
• lower_vertex_ : core::graph::UEEdge< V, E >
• lowres_cut : core::scoring::electron_density::ElectronDensity
• lowtemp : core::pack::annealer::SimAnnealerBase
• lowtemp_ : core::pack::annealer::SimAnnealerBase
• lr_2b_methods_ : core::scoring::ScoreFunction
• lr_As_ : core::scoring::CenHBPotential
• lr_conn_ : core::conformation::PseudoBond
• lr_mus_ : core::scoring::CenHBPotential
• lr_sigmas_ : core::scoring::CenHBPotential
• LW_orientation : core::scoring::rna::Base_pair
• lX_ : core::grid::CartGrid< T >
• lY_ : core::grid::CartGrid< T >
• lZ_ : core::grid::CartGrid< T >