- n -

n : core::io::raw_data::DisulfideFile::ResNum
N1_ : core::scoring::constraints::BigBinConstraint
N2_ : core::scoring::constraints::BigBinConstraint
N_ : core::scoring::BB_Pos
n_ : core::scoring::func::MinMultiHarmonicFunc
n_aa_ : core::scoring::Ramachandran2B , core::scoring::Ramachandran
n_actcoord_atoms_ : core::chemical::ResidueType
n_active_dof_nodes_ : core::pack::scmin::AtomTreeSCMinMinimizerMap
N_ANGLE1_BINS : core::scoring::methods::GoapEnergy
N_ANGLE2_BINS : core::scoring::methods::GoapEnergy
n_assigned_at_start_ : core::pack::annealer::RotamerAssigningAnnealer
N_ATMTYPES : core::scoring::methods::GoapEnergy
N_atom_id_ : core::scoring::constraints::BackboneStubLinearConstraint
n_atomtypes : core::scoring::etable::MembEtable
n_atomtypes_ : core::scoring::etable::Etable
n_backbone_heavyatoms_ : core::chemical::ResidueType
n_baserotamers_for_rotblock_ : core::pack::rotamer_set::ContinuousRotamerSet
n_baserots_total_ : core::pack::rotamer_set::ContinuousRotamerSet
n_carbons_ : core::chemical::carbohydrates::CarbohydrateInfo
n_chi_bins_ : core::pack::dunbrack::SingleResidueDunbrackLibrary
n_chi_products_ : core::pack::dunbrack::SingleResidueDunbrackLibrary
n_connect_ : core::scoring::etable::count_pair::CountPairGeneric
n_cut : core::scoring::TMscoreStore
N_DISTANCE_BINS : core::scoring::methods::GoapEnergy
n_dof_nodes_ : core::optimization::symmetry::SymMinimizerMap
n_entries_ : core::scoring::trie::CPDataCorrespondence
n_full_updates_ : core::scoring::NeighborList
n_GDT05 : core::scoring::TMscoreStore
n_GDT05_max : core::scoring::TMscoreStore
n_GDT1 : core::scoring::TMscoreStore
n_GDT1_max : core::scoring::TMscoreStore
n_GDT2 : core::scoring::TMscoreStore
n_GDT2_max : core::scoring::TMscoreStore
n_GDT4 : core::scoring::TMscoreStore
n_GDT4_max : core::scoring::TMscoreStore
n_GDT8 : core::scoring::TMscoreStore
n_GDT8_max : core::scoring::TMscoreStore
n_grid_ : core::scoring::PoissonBoltzmannPotential
n_hbond_acceptors_ : core::chemical::ResidueType
n_hbond_donors_ : core::chemical::ResidueType
n_hphobes_ : core::pack::interaction_graph::HPatchBackgroundNode< V, E, G >
n_independent_dof_nodes_ : core::optimization::symmetry::SymMinimizerMap
N_index_ : core::scoring::BB_Pos
n_jumps_ : core::environment::FoldTreeSketch
n_non_polymeric_residue_connections_ : core::chemical::ResidueType
n_nrchi_sample_bins_ : core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T >
n_nv_dist_sd_ : core::scoring::methods::ProClosureEnergy
n_orbitals_ : core::chemical::orbitals::AssignOrbitals , core::chemical::ResidueType
n_packed_rots_ : core::pack::dunbrack::SingleResidueDunbrackLibrary
n_pconnect_ : core::scoring::etable::count_pair::CountPairGeneric
n_periodic_ : core::scoring::func::AmberPeriodicFunc , core::scoring::func::CharmmPeriodicFunc , core::scoring::func::PeriodicFunc
n_phi_ : core::scoring::Ramachandran2B , core::scoring::Ramachandran
N_PHIPSI_BINS : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary , core::pack::dunbrack::RotamericSingleResidueDunbrackLibrary< T >
n_polymeric_residue_connections_ : core::chemical::ResidueType
n_possible_rots_ : core::pack::dunbrack::SingleResidueDunbrackLibrary
n_prepare_for_scorings_ : core::scoring::NeighborList
n_psi_ : core::scoring::Ramachandran2B , core::scoring::Ramachandran
n_residue_groups_ : core::pack::rotamer_set::RotamerSet_ , core::pack::rotamer_set::RotamerSubset
n_residue_types_ : core::pack::rotamer_set::RotamerSet_ , core::pack::rotamer_set::RotamerSubset
n_restypes_ : core::pack::rotamer_set::ContinuousRotamerSet
n_rotameric_chi_ : core::pack::dunbrack::SingleResidueDunbrackLibrary
n_rotamers_for_resgroup_ : core::pack::rotamer_set::RotamerSet_ , core::pack::rotamer_set::RotamerSubset
n_rotamers_for_restype_ : core::pack::rotamer_set::RotamerSet_ , core::pack::rotamer_set::RotamerSubset
n_sample_rotamers_ : core::pack::rotamer_set::ContinuousRotamerSets
n_samplingrots_for_rotblock_ : core::pack::rotamer_set::ContinuousRotamerSet
n_samplingrots_total_ : core::pack::rotamer_set::ContinuousRotamerSet
N_target_ : core::scoring::constraints::BackboneStubLinearConstraint
N_term_inside_ : core::scoring::MembraneTopology
n_to_be_packed_ : core::pack::task::PackerTask_
n_to_be_packed_up_to_date_ : core::pack::task::PackerTask_
n_unassigned_ : core::pack::scmin::SidechainStateAssignment
n_update_from_wide_ : core::scoring::NeighborList
na_allowed_ : core::pack::task::PIKAA
NACCESS_SASA_radii_ : core::pack::interaction_graph::RotamerDotsRadiusData
NACCESS_SASA_radii_with_expanded_polars : core::pack::interaction_graph::RotamerDotsRadiusData
nAccessibleDots : core::scoring::sc::_RESULTS
nactive_moving_atoms_ : core::pack::scmin::CartSCMinMinimizerMap
nactive_moving_atoms_total_ : core::pack::scmin::CartSCMinMinimizerMap
nactive_residues_ : core::pack::scmin::SCMinMinimizerMap
nAllDots : core::scoring::sc::_RESULTS
name : core::io::pdb::AtomInformation , core::kinematics::Node , core::pose::rna::RNA_SuiteAssignment , core::pose::rna::RNA_SuiteInfo
name1 : core::io::pdb::LinkInformation
name1_ : core::chemical::ResidueType , core::chemical::Selector_NAME1 , core::chemical::SetIO_String
name2 : core::io::pdb::LinkInformation
name2abego_ : core::util::ABEGOManager
name2acc_chem_type_ : core::scoring::hbonds::HBondTypeManager
name2component_ : core::conformation::symmetry::SymmData , core::conformation::symmetry::SymmetryInfo
name2deriv_type_ : core::scoring::hbonds::HBondTypeManager
name2don_chem_type_ : core::scoring::hbonds::HBondTypeManager
name2enum_ : core::pose::datacache::CacheableDataType
name2geo_dim_type_ : core::scoring::hbonds::HBondTypeManager
name2hybridization_type_ : core::scoring::hbonds::HBondTypeManager
name2score_type_ : core::scoring::ScoreTypeManager
name2seq_sep_type_ : core::scoring::hbonds::HBondTypeManager
name2weight_type_ : core::scoring::hbonds::HBondTypeManager
name3_ : core::chemical::ResidueType , core::chemical::SetIO_String
name3_map_ : core::chemical::ResidueTypeSet
name3_set : core::pack::task::operation::ResidueName3Is
name3s_ : core::chemical::Selector_NAME3
name_ : core::chemical::Atom , core::chemical::AtomType , core::chemical::gasteiger::GasteigerAtomTypeData , core::chemical::MMAtomType , core::chemical::Orbital , core::chemical::Patch , core::chemical::ResidueType , core::chemical::ResidueTypeSet , core::coarse::Translator::BeadAtom , core::environment::EnvCore , core::grid::CartGrid< T > , core::io::silent::SilentEnergy , core::pose::PDBInfo , core::scoring::hbonds::FadeInterval , core::scoring::methods::GoapRsdType , core::scoring::saxs::FormFactor , core::scoring::ScoreFunction , core::util::ABEGO
name_map_ : core::chemical::ResidueTypeSet
name_of_InterfaceNeighborDefinitionCalculator_ : core::pose::metrics::simple_calculators::InterfaceDeltaEnergeticsCalculator
named_atom1_ : core::scoring::constraints::NamedAtomPairConstraint
named_atom2_ : core::scoring::constraints::NamedAtomPairConstraint
names_to_indexes_ : core::scoring::saxs::FormFactorManager
native_pose_ : core::scoring::methods::RMS_Energy
native_task_ : core::pack::task::operation::ReplicateTask
natom : core::scoring::packing::HolesResult , core::scoring::sc::Atom
natom_ : core::scoring::methods::GoapRsdType
natoms : core::scoring::APBSConfig
nAtoms : core::scoring::sc::_RESULTS
natoms_ : core::chemical::AutomorphismIterator , core::optimization::DOF_DataPoint , core::pack::scmin::ResidueAtomTreeCollectionMomento , core::scoring::FACTSResidueInfo , core::scoring::FACTSRsdTypeInfo , core::scoring::hbonds::HBondResidueMinData , core::scoring::PQR , core::scoring::trie::RotamerDescriptor< AT, CPDAT >
nb_weights_ : core::scoring::packing::HolesParams
nballs_ : core::scoring::packing::PoseBalls , core::scoring::packing::PoseBallsLite
nbhist_ : core::scoring::packing::PoseBalls
nblist_ : core::scoring::Energies , core::scoring::NeighborList , core::scoring::symmetry::NBListCache
nblist_auto_update_ : core::optimization::MinimizerOptions
nblist_dis2_cutoff_HH_ : core::scoring::etable::Etable , core::scoring::etable::MembEtable , core::scoring::mm::MMLJLibrary
nblist_dis2_cutoff_XH_ : core::scoring::etable::Etable , core::scoring::etable::MembEtable , core::scoring::mm::MMLJLibrary
nblist_dis2_cutoff_XX_ : core::scoring::etable::Etable , core::scoring::etable::MembEtable , core::scoring::mm::MMLJLibrary
nBlockedAtoms : core::scoring::sc::_RESULTS
nblocks_ : core::graph::ArrayPool< T >
nbonds_ : core::chemical::ResidueType , core::conformation::PseudoBond
nbr_atom_ : core::chemical::ResidueType
nbr_atom_indices_ : core::chemical::ResidueType
nbr_distance_squared_ : core::scoring::orbitals::OrbitalsScore
nbr_radius_ : core::chemical::ResidueType
nbrs : core::optimization::AtomNode
nbrs_ : core::scoring::hbonds::HBondSet
nBuriedAtoms : core::scoring::sc::_RESULTS
nBuriedDots : core::scoring::sc::_RESULTS
nc_to_include_ : core::pack::task::NC
ncaa_rotlib_n_bins_per_rot_ : core::chemical::ResidueType
ncaa_rotlib_n_rots_ : core::chemical::ResidueType
ncaa_rotlib_path_ : core::chemical::ResidueType
ncaa_rotlibs_ : core::pack::dunbrack::RotamerLibrary
ncacac_dihedral_func_ : core::scoring::disulfides::CentroidDisulfidePotential
nchi_ : core::pack::dunbrack::DunbrackRotamerSampleData
nchi_aa : core::pack::dunbrack::CoarseRotamer
nconnections_for_entry_ : core::scoring::trie::CPDataCorrespondence
ncopies_ : core::fragment::FragmentIO
ndihe_ : core::chemical::ResidueType
ndofs_added_for_focused_residue_ : core::pack::scmin::AtomTreeSCMinMinimizerMap
nearby_atom_cut_ : core::pack::task::residue_selector::InterGroupInterfaceByVectorSelector
neg_begin_ : core::graph::ArrayPool< T >
neg_ptr_ : core::graph::ArrayPoolElement< T >
neg_space_blocks_ : core::graph::ArrayPool< T >
negative_better_ : core::sequence::SequenceProfile
negln_rotprob_ : core::pack::dunbrack::RotamerLibraryScratchSpace
neighbor_cutoff_ : core::scoring::solid_surface::SurfaceEnergies
neighbor_mass_ : core::scoring::TenANeighborNode
neighbor_relaxed_in_sBR_ : core::pack::interaction_graph::FASTERNode
neighbors : core::scoring::sc::Atom
neighbors_curr_state_ : core::pack::interaction_graph::DensePDNode , core::pack::interaction_graph::DoubleDensePDNode , core::pack::interaction_graph::DoubleLazyNode , core::pack::interaction_graph::FASTERNode , core::pack::interaction_graph::LazyNode , core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::PDNode , core::pack::interaction_graph::SymmLinearMemNode , core::pack::interaction_graph::SymmMinimalistNode
neighbors_curr_state_plus_offset_ : core::pack::interaction_graph::DoubleDensePDNode
neighbors_curr_state_sparse_info_ : core::pack::interaction_graph::DoubleLazyNode , core::pack::interaction_graph::LazyNode , core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::PDNode
neighbors_num_states_ : core::pack::interaction_graph::DoubleDensePDNode
neighbors_rotindex_offset_ : core::pack::interaction_graph::DoubleDensePDNode
neighbors_state_recent_history_index_ : core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::SymmLinearMemNode
netstate_duplicated_ : core::pack::annealer::FASTERAnnealer
NEUTRAL_PHI : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary , core::pack::dunbrack::SingleResidueDunbrackLibrary
NEUTRAL_PSI : core::pack::dunbrack::cenrot::SingleResidueCenrotLibrary , core::pack::dunbrack::SingleResidueDunbrackLibrary
new_cache_ : core::fragment::CacheWrapper< T, XCacheUnit >
new_chain_order_ : core::io::pdb::PDB_DReaderOptions
new_icoor_ : core::chemical::Orbital
new_order : core::kinematics::FoldTree
new_topology : core::kinematics::FoldTree
nex_ : core::scoring::ResidualDipolarCoupling
next_ : core::graph::EdgeListElement , core::graph::NegSpaceElement< T >
next_trace_ : core::scoring::packstat::trace
nheavyatoms_ : core::chemical::ResidueType
nions : core::scoring::APBSConfig::I_PARAM
njump_monomer_ : core::conformation::symmetry::SymmetryInfo
nkbins_ : core::scoring::electron_density::ElectronDensity
nlev : core::scoring::APBSConfig::I_PARAM
nmer_cterm_ : core::scoring::methods::NMerPSSMEnergy , core::scoring::methods::NMerRefEnergy , core::scoring::methods::NMerSVMEnergy
nmer_length_ : core::scoring::methods::NMerPSSMEnergy , core::scoring::methods::NMerRefEnergy , core::scoring::methods::NMerSVMEnergy
nmer_pssm_ : core::scoring::methods::NMerSVMEnergy
nmer_pssm_scorecut_ : core::scoring::methods::NMerPSSMEnergy
nmer_ref_energies_ : core::scoring::methods::NMerRefEnergy
nmer_svm_scorecut_ : core::scoring::methods::NMerSVMEnergy
nmoltenres_ : core::pack::rotamer_set::ContinuousRotamerSets , core::pack::rotamer_set::RotamerSets , core::pack::rotamer_set::RotamerSubsets , core::pack::scmin::SidechainStateAssignment
nmtr_ : core::scoring::FACTSResidueInfo
nnegative_ : core::graph::ArrayPool< T >
nneighbors_ : core::scoring::hbonds::HBondResidueMinData
nneighbs_ : core::io::sequence_comparation::DesignContrast , core::scoring::methods::LK_hack
no_dis_dep_die_ : core::scoring::etable::coulomb::Coulomb
NO_DISULFIDE : core::scoring::disulfides::CentroidDisulfideEnergyContainer , core::scoring::disulfides::DisulfideMatchingEnergyContainer , core::scoring::disulfides::FullatomDisulfideEnergyContainer
no_index_ : core::chemical::AddChi , core::chemical::AddChiRotamer
no_interpolate_Mpair : core::conformation::membrane::EmbedSearchParams
no_interpolate_mpair_ : core::membrane::io::EmbedSearchParamsOptions
no_interpolate_Mpair_ : core::scoring::MembranePotential
no_optH_ : core::import_pose::ImportPoseOptions
node_changing_ : core::pack::interaction_graph::HPatchEdge< V, E, G > , core::pack::interaction_graph::SurfaceEdge< V, E, G >
node_considering_alt_state_ : core::pack::interaction_graph::DensePDInteractionGraph , core::pack::interaction_graph::DoubleDensePDInteractionGraph , core::pack::interaction_graph::DoubleLazyInteractionGraph , core::pack::interaction_graph::FASTERInteractionGraph , core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::LazyInteractionGraph , core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::PDInteractionGraph , core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G > , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
node_dist_ : core::kinematics::ShortestPathInFoldTree
node_index_ : core::graph::Node , core::pack::interaction_graph::BackgroundNode< V, E, G > , core::pack::interaction_graph::exposed_hydrophobic_data , core::pack::interaction_graph::NodeBase
node_indices_ : core::graph::Edge , core::pack::interaction_graph::EdgeBase
node_not_changing_ : core::pack::interaction_graph::HPatchEdge< V, E, G > , core::pack::interaction_graph::SurfaceEdge< V, E, G >
node_state_offsets_ : core::pack::interaction_graph::InteractionGraphBase
node_states_coverage_of_bg_res_ : core::pack::interaction_graph::HPatchBackgroundEdge< V, E, G >
node_states_overlap_with_bg_res_ : core::pack::interaction_graph::HPatchBackgroundEdge< V, E, G >
nodes_ : core::environment::FoldTreeSketch , core::graph::DisjointSets , core::graph::Edge , core::graph::Graph , core::pack::interaction_graph::EdgeBase
nodes_alt_pair_dot_counts_ : core::pack::interaction_graph::HPatchEdge< V, E, G >
nodes_alt_state_ : core::pack::interaction_graph::HPatchBackgroundEdge< V, E, G >
nodes_alt_states_ : core::pack::interaction_graph::HPatchEdge< V, E, G > , core::pack::interaction_graph::SurfaceEdge< V, E, G >
nodes_curr_pair_dot_counts_ : core::pack::interaction_graph::HPatchEdge< V, E, G >
nodes_curr_state_ : core::pack::interaction_graph::HPatchBackgroundEdge< V, E, G >
nodes_curr_states_ : core::pack::interaction_graph::HPatchEdge< V, E, G > , core::pack::interaction_graph::SurfaceEdge< V, E, G >
non_main_chain_sugar_coords_ : core::io::silent::RNA_SilentStruct
non_main_chain_sugar_coords_defined_ : core::io::silent::RNA_SilentStruct
non_residue_pair_constraints_ : core::scoring::constraints::ConstraintSet
non_surface_ranges_ : core::scoring::solid_surface::SurfaceEnergies
nonconst_name_map_ : core::chemical::ResidueTypeSet
nondefault_ : core::chemical::ResidueType
nondegenerate_conformers_ : core::chemical::RingConformerSet
nonideal_ : core::pack::RTMin , core::pack::scmin::SCMinMinimizerMap
nonprepro_restype_data_ : core::scoring::methods::IdealParametersDatabase
nonstandard_polymer_ : core::conformation::Residue
norm_factor_ : core::pack::dunbrack::cenrot::CentroidRotamerSampleData
normal : core::conformation::membrane::EmbedConfigInfo
normal_ : core::conformation::membrane::MembraneInfo , core::scoring::hbonds::HBondEnergy , core::scoring::MembraneEmbed
normal_cycles : core::conformation::membrane::EmbedSearchParams
normal_cycles_ : core::membrane::io::EmbedSearchParamsOptions
normal_delta_angle : core::conformation::membrane::EmbedSearchParams
normal_delta_angle_ : core::membrane::io::EmbedSearchParamsOptions
normal_mag : core::conformation::membrane::EmbedSearchParams
normal_mag_ : core::membrane::io::EmbedSearchParamsOptions
normal_max_angle : core::conformation::membrane::EmbedSearchParams
normal_max_angle_ : core::membrane::io::EmbedSearchParamsOptions
normal_search : core::conformation::membrane::EmbedSearchParams
normal_search_ : core::membrane::io::EmbedSearchParamsOptions
normal_start_angle : core::conformation::membrane::EmbedSearchParams
normal_start_angle_ : core::membrane::io::EmbedSearchParamsOptions
normal_tag : core::conformation::membrane::EmbedConfigInfo
normalization : core::scoring::electron_density_atomwise::ElectronDensityAtomwise
not_using_ : core::scoring::FACTSRsdTypeInfo
NOT_YET_COMPUTED_ENERGY : core::pack::interaction_graph::DoubleLazyEdge , core::pack::interaction_graph::LazyEdge , core::pack::interaction_graph::LinearMemEdge , core::pack::interaction_graph::SymmLinearMemEdge
npEnergy : core::scoring::APBSResult
npoints_ : core::grid::CartGrid< T >
npr_ : core::scoring::packstat::PackingScore , core::scoring::packstat::PackingScoreResData
npseudo_ : core::conformation::symmetry::SymmetryInfo
npx : core::scoring::APBSResult
npy : core::scoring::APBSResult
npz : core::scoring::APBSResult
nr_res_ : core::fragment::Frame
nrad_ : core::scoring::packstat::PackingScore , core::scoring::packstat::PackingScoreResData
nrchi_bin_ : core::pack::dunbrack::BBDepNRChiSample< P >
nrchi_bin_id_ : core::pack::dunbrack::BBIndSemiRotamericData< T >
nrchi_lower_angle_ : core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T >
nrchi_lower_boundary_ : core::pack::dunbrack::DunbrackRotamerSampleData
nrchi_mean_ : core::pack::dunbrack::BBDepNRChiSample< P >
nrchi_periodicity_ : core::pack::dunbrack::SemiRotamericSingleResidueDunbrackLibrary< T >
nrchi_probability_ : core::pack::dunbrack::DunbrackRotamerSampleData
nrchi_sample_ : core::pack::dunbrack::DunbrackRotamerSampleData
nrchi_sd_ : core::pack::dunbrack::BBDepNRChiSample< P >
nrchi_upper_boundary_ : core::pack::dunbrack::DunbrackRotamerSampleData
nres_ : core::conformation::membrane::MembraneInfo , core::io::raw_data::RawStruct , core::io::silent::SilentStruct , core::kinematics::FoldTree , core::kinematics::ShortestPathInFoldTree , core::pack::task::IGEdgeReweightContainer , core::pack::task::PackerTask_ , core::scoring::methods::ProQ_Energy
nres_monomer_ : core::conformation::symmetry::SymmetryInfo , core::scoring::elec::FA_ElecEnergy
nres_scored : core::scoring::methods::RG_MinData
nreses : core::scoring::electron_density::ElecDensAllAtomCenEnergy , core::scoring::electron_density::ElecDensCenEnergy , core::scoring::electron_density::PattersonCorrEnergy
nresidue : core::scoring::sc::Atom
nrotamer_offsets_ : core::pack::rotamer_set::RotamerSets , core::pack::rotamer_set::RotamerSubsets
nrotamers_ : core::pack::rotamer_set::RotamerSets , core::pack::rotamer_set::RotamerSubsets
nrotamers_for_moltenres_ : core::pack::rotamer_set::RotamerSets , core::pack::rotamer_set::RotamerSubsets
nrows_ : core::scoring::ResidualDipolarCoupling
nsdie : core::scoring::APBSConfig::R_PARAM
nseq_ : core::scoring::TMscore , core::scoring::TMscoreStore
nseq_ref_ : core::scoring::TMscoreStore
nsims : core::scoring::APBSConfig
nstep_ : core::pack::rotamer_set::WaterAnchorInfo
nsteps_ : core::pack::annealer::MultiCoolAnnealer
nsteps_for_rot_ : core::pack::annealer::MultiCoolAnnealer
ntimes_ : core::import_pose::pose_stream::ExtendedPoseInputStream
nTrimmedDots : core::scoring::sc::_RESULTS
nu0_atom_names_ : core::scoring::dna::DNATorsionPotential
nu0_components_ : core::scoring::dna::DNATorsionPotential
nu1_atom_names_ : core::scoring::dna::DNATorsionPotential
nu1_components_ : core::scoring::dna::DNATorsionPotential
nu1_north_potential_ : core::scoring::rna::RNA_TorsionPotential
nu1_south_potential_ : core::scoring::rna::RNA_TorsionPotential
nu2_atom_names_ : core::scoring::dna::DNATorsionPotential
nu2_components_ : core::scoring::dna::DNATorsionPotential
nu2_north_potential_ : core::scoring::rna::RNA_TorsionPotential
nu2_south_potential_ : core::scoring::rna::RNA_TorsionPotential
nu3_atom_names_ : core::scoring::dna::DNATorsionPotential
nu3_components_ : core::scoring::dna::DNATorsionPotential
nu4_atom_names_ : core::scoring::dna::DNATorsionPotential
nu4_components_ : core::scoring::dna::DNATorsionPotential
nu_angles : core::chemical::RingConformer
nu_atoms_ : core::chemical::ResidueType
nu_atoms_indices_ : core::chemical::ResidueType
nullaa : core::scoring::Ramachandran2B
num : core::pose::RemarkInfo , core::scoring::packstat::SimplePDB_Atom
num_aa_ : core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< T >
num_aa_types_ : core::pack::interaction_graph::LazyInteractionGraph , core::pack::interaction_graph::OnTheFlyInteractionGraph , core::pack::interaction_graph::OnTheFlyNode , core::pack::interaction_graph::PDInteractionGraph , core::pack::interaction_graph::PDNode
num_atoms_ : core::pack::interaction_graph::RotamerDots
num_bg_nodes_ : core::pack::interaction_graph::AdditionalBackgroundNodesInteractionGraph< V, E, G >
num_bins_ : core::scoring::carbon_hbonds::CarbonHBondPotential , core::scoring::func::CircularGeneral1D_Func
num_bytes_ : core::pack::interaction_graph::RotamerDots , core::scoring::sasa::LeGrandSasa
NUM_BYTES_IN_DOT_SPHERE_OVERLAP_ARRAYS : core::pack::interaction_graph::DotSphere
num_carbon_donor_atoms_ : core::scoring::carbon_hbonds::CarbonHBondPotential
num_cav_ball_layers : core::scoring::packstat::SasaOptions
num_chain1_interface_residues_ : core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator , core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
num_chain2_interface_residues_ : core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator , core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
num_commits_since_last_update_ : core::pack::interaction_graph::DensePDInteractionGraph , core::pack::interaction_graph::DoubleDensePDInteractionGraph , core::pack::interaction_graph::DoubleLazyInteractionGraph , core::pack::interaction_graph::FASTERInteractionGraph , core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::LazyInteractionGraph , core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::PDInteractionGraph , core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G > , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
num_components_ : core::conformation::symmetry::SymmData , core::conformation::symmetry::SymmetryInfo
NUM_COUNTS_TO_ALLOCATE : core::pack::interaction_graph::DotSphere
num_covered_ : core::pack::interaction_graph::DotSphere
num_covered_current_ : core::pack::interaction_graph::DotSphere
num_cutpoint_ : core::kinematics::FoldTree
num_deriv_ : core::optimization::DerivCheckDataPoint , core::optimization::DOF_DataPoint
NUM_DERIV_H : core::scoring::electron_density::ElectronDensity
NUM_DERIV_H_CEN : core::scoring::electron_density::ElectronDensity
NUM_DOTS_TOTAL : core::pack::interaction_graph::DotSphere
num_edges_ : core::graph::Graph , core::graph::UpperEdgeGraph< V, E >
num_edges_to_bg_nodes_ : core::pack::interaction_graph::FirstClassNode< V, E, G >
num_edges_to_larger_indexed_nodes_ : core::graph::Node , core::pack::interaction_graph::NodeBase
NUM_EDGES_TO_RESERVE : core::conformation::PointGraphVertexData
num_edges_to_smaller_indexed_nodes_ : core::graph::Node , core::pack::interaction_graph::NodeBase
num_energy_sum_groups_ : core::pack::interaction_graph::InteractionGraphBase
num_features_proq2_ : core::scoring::ProQPotential
num_features_proqm_ : core::scoring::ProQPotential
num_file_aa_types_ : core::pack::interaction_graph::PDInteractionGraph
num_file_states_for_aa_for_node_ : core::pack::interaction_graph::PDInteractionGraph
num_hbonds : core::scoring::rna::Base_pair
num_hbonds_ : core::scoring::hbonds::HBondEnergy
num_heavyatoms_ : core::scoring::trie::RotamerTrie< AT, CPDATA >
num_hpatch_comps_later_made_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
num_hpatch_comps_procrastinated_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
num_ig_nodes_ : core::pack::interaction_graph::InteractionGraphBase
num_incident_edges_ : core::graph::Node , core::pack::interaction_graph::BackgroundNode< V, E, G > , core::pack::interaction_graph::NodeBase
num_interface_residues_ : core::pose::metrics::simple_calculators::InterfaceNeighborDefinitionCalculator , core::pose::metrics::simple_calculators::InterfaceSasaDefinitionCalculator
num_jump_ : core::kinematics::FoldTree
num_lower_edges_ : core::graph::UEVertex< V, E >
num_models_ : core::scoring::ProQPotential
num_neighbors_counting_self_ : core::pack::interaction_graph::SurfaceBackgroundNode< V, E, G > , core::pack::interaction_graph::SurfaceNode< V, E, G >
num_neighbors_counting_self_static_ : core::graph::Node
num_node_states_ : core::pack::interaction_graph::EdgeBase
num_nodes_ : core::graph::Graph , core::pack::annealer::FASTERAnnealer
num_nodes_in_file_ : core::pack::interaction_graph::PDInteractionGraph
num_orientations_ : core::scoring::sasa::LeGrandSasa
num_overlaps_ : core::scoring::sasa::LeGrandSasa
num_pairs : core::scoring::dna::DirectReadoutPotential
num_phi_ : core::scoring::sasa::LeGrandSasa
num_recently_accepted_ : core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::SymmLinearMemNode
num_res_types_ : core::pack::interaction_graph::SymmOnTheFlyNode
num_residues_assigned_as_background_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G >
num_restype_groups_ : core::pack::interaction_graph::SymmOnTheFlyInteractionGraph , core::pack::interaction_graph::SymmOnTheFlyNode
num_rings_ : core::scoring::rna::chemical_shift::RNA_CS_residue_parameters
num_RNA_backbone_oxygen_atoms_ : core::scoring::rna::RNA_LowResolutionPotential
num_RNA_base_pair_orientations_ : core::scoring::rna::RNA_LowResolutionPotential
num_RNA_res_types_ : core::scoring::rna::RNA_LowResolutionPotential
num_rots_to_pack_ : core::pack::annealer::SimAnnealerBase
num_rpe_calcs_ : core::pack::interaction_graph::OnTheFlyInteractionGraph , core::pack::interaction_graph::SymmOnTheFlyInteractionGraph
num_sa_trajectories_ : core::pack::annealer::FASTERAnnealer
num_stacks_ : core::pose::Pose
num_state_substitutions_considered_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::SurfaceNode< V, E, G >
num_states_ : core::pack::interaction_graph::NodeBase
num_states_for_aa_type_for_higher_indexed_neighbor_ : core::pack::interaction_graph::LazyNode , core::pack::interaction_graph::PDNode
num_states_for_aatype_ : core::pack::interaction_graph::OnTheFlyNode , core::pack::interaction_graph::PDNode
num_states_for_restype_group_ : core::pack::interaction_graph::SymmOnTheFlyNode
num_substitutions_since_hpatch_min_update_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G >
num_substitutions_since_surface_min_update_ : core::pack::interaction_graph::SurfaceNode< V, E, G >
num_surface_comps_later_made_ : core::pack::interaction_graph::SurfaceNode< V, E, G >
num_surface_comps_procrastinated_ : core::pack::interaction_graph::SurfaceNode< V, E, G >
num_surface_deltaE_observations_since_update_ : core::pack::interaction_graph::SurfaceBackgroundEdge< V, E, G > , core::pack::interaction_graph::SurfaceEdge< V, E, G >
num_surrounding_sasa_bins : core::scoring::packstat::SasaOptions
num_theta_ : core::scoring::sasa::LeGrandSasa
num_top_kept_ : core::pack::annealer::MultiCoolAnnealer
num_total_atoms_ : core::scoring::trie::RotamerTrie< AT, CPDATA >
num_total_residues_ : core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G >
num_total_rotamers_ : core::scoring::trie::RotamerTrie< AT, CPDATA >
num_total_states_ : core::pack::interaction_graph::InteractionGraphBase
num_unique_rotamers_ : core::scoring::trie::RotamerTrie< AT, CPDATA >
num_unrecognized_atoms_ : core::pose::PDBInfo
num_unrecognized_res_ : core::pose::PDBInfo
num_upper_edges_ : core::graph::UEVertex< V, E >
num_vertices_ : core::graph::UpperEdgeGraph< V, E >
number_bonds_ : core::chemical::gasteiger::GasteigerAtomTypeData
number_electrons_in_bonds_ : core::chemical::gasteiger::GasteigerAtomTypeData
number_elements_ : core::scoring::orbitals::OrbitalsLookup
number_hybrid_orbitals_nonbinding_ : core::chemical::gasteiger::GasteigerAtomTypeData
number_hybrid_orbitals_sigma_binding_ : core::chemical::gasteiger::GasteigerAtomTypeData
number_of_histograms_ : core::scoring::orbitals::OrbitalsStatistics
number_stats_ : core::scoring::orbitals::OrbitalsLookup
numBonds_ : core::chemical::sdf::atomTyper
numEdges_ : core::sequence::SequenceCoupling
numeric_properties_ : core::chemical::ResidueType
numVerts_ : core::sequence::SequenceCoupling
nus_ : core::conformation::Residue
NV_lookup_table_ : core::scoring::ScoringManager
nwrites : core::scoring::APBSResult
nX_ : core::grid::CartGrid< T >
Nx_ : core::scoring::packstat::Array2D
nY_ : core::grid::CartGrid< T >
Ny_ : core::scoring::packstat::Array2D
nZ_ : core::grid::CartGrid< T >