- t -

• T_ : core::scoring::ResidualDipolarCoupling
• T_bins : core::scoring::dna::DirectReadoutPotential
• table_ : core::scoring::DenseEnergyContainer , core::scoring::DenseNeighborConstIterator , core::scoring::DenseNeighborIterator , core::scoring::OneToAllEnergyContainer , core::scoring::OneToAllNeighborConstIterator , core::scoring::OneToAllNeighborIterator
• table_size_ : core::pack::interaction_graph::AminoAcidNeighborSparseMatrix< T >
• tables_ : core::scoring::PeptideBondedEnergyContainer , core::scoring::PeptideBondedNeighborConstIterator , core::scoring::PeptideBondedNeighborIterator
• tag : core::conformation::signals::ConnectionEvent , core::conformation::signals::IdentityEvent , core::conformation::signals::LengthEvent , core::optimization::EItem
• tag_ : core::fragment::CacheWrapper< T, XCacheUnit > , core::scoring::methods::BBDepCartBondedParameters , core::scoring::packstat::MultiProbePoseAccumulator
• tag_idx_ : core::import_pose::atom_tree_diffs::AtomTreeDiff
• tags_ : core::import_pose::pose_stream::SilentFilePoseInputStream
• takeoff_atom_ : core::scoring::loop_graph::LoopScoreInfo
• takeoff_domain_ : core::scoring::loop_graph::Loop
• takeoff_pos_ : core::scoring::loop_graph::Loop
• target_function_ : core::scoring::cryst::PhenixInterface
• target_residue_type_ : core::pack::task::ResidueLevelTask_
• task_ : core::pack::rotamer_set::RotamerSets
• task_operation_creator_map_ : core::pack::task::operation::TaskOperationFactory
• Tau_ : core::scoring::FACTSPotential
• tau_angles : core::chemical::RingConformer
• tccw : core::scoring::packstat::Circle
• tcw : core::scoring::packstat::Circle
• temp : core::scoring::APBSConfig::R_PARAM
• temp1_ : core::scoring::AtomNeighbor
• temp2_ : core::scoring::AtomNeighbor
• temp3_ : core::scoring::AtomNeighbor
• temp4_ : core::scoring::AtomNeighbor
• temp_ : core::pose::UnrecognizedAtomRecord , core::sequence::SequenceCoupling , core::sequence::SequenceProfile
• temp_EMap_ : core::scoring::constraints::AmbiguousConstraint
• tempdir_ : core::scoring::cryst::PhenixInterface
• temperature : core::io::pdb::AtomInformation , core::pose::PDBInfo::AtomRecord
• temperature_ : core::pack::annealer::SimAnnealerBase
• temps : core::io::pdb::ResidueInformation
• tenA_ : core::scoring::TenANeighborGraph
• tenA_edge_pool_ : core::scoring::TenANeighborGraph
• tenA_squared_ : core::scoring::TenANeighborGraph
• tensorDa : core::scoring::data_structDa , core::scoring::data_structDaR
• tensorR : core::scoring::data_structDaR , core::scoring::data_structR
• terCount : core::io::pdb::AtomInformation , core::io::pdb::ResidueInformation
• term_length_ : core::scoring::methods::NMerSVMEnergy
• the_config_file_ : core::scoring::saxs::SAXSEnergy
• theta0_ : core::scoring::mm::MMBondAngleResidueTypeParam
• theta_ : core::chemical::AddConnect , core::chemical::Adduct , core::chemical::AtomICoor , core::chemical::orbitals::ICoorOrbitalData , core::chemical::SetICoor , core::kinematics::tree::BondedAtom
• thickness_ : core::scoring::hbonds::HBondEnergy , core::scoring::Membrane_FAEmbed , core::scoring::packstat::Slice
• this_weak_ptr_ : core::kinematics::AtomTree , core::kinematics::tree::Atom_
• threshold_ : core::pack::task::residue_selector::NumNeighborsSelector
• THRESHOLD_ACCEPTANCE_RATE_FOR_RPE_STORAGE : core::pack::interaction_graph::LinearMemNode , core::pack::interaction_graph::SymmLinearMemNode
• throw_on_double_registration_ : core::pack::task::residue_selector::ResidueSelectorFactory
• time_data_mean_ : core::scoring::methods::D2H_SA_Energy
• time_data_std_ : core::scoring::methods::D2H_SA_Energy
• TIME_TO_UPDATE : core::scoring::TenANeighborNode
• title_ : core::io::pdb::HeaderInformation
• TM : core::scoring::TMscoreStore
• TM10 : core::scoring::TMscoreStore
• TM10_max : core::scoring::TMscoreStore
• TM_max : core::scoring::TMscoreStore
• tm_projection_ : core::scoring::MembraneEmbed
• TM_sum : core::scoring::TMscoreStore
• TM_sum10 : core::scoring::TMscoreStore
• tmh_inserted_ : core::conformation::membrane::SpanningTopology , core::scoring::MembraneTopology
• tmregion_ : core::conformation::membrane::SpanningTopology , core::scoring::MembraneTopology
• tokens_ : core::coarse::Rule::BeadAdder
• tol_ : core::scoring::func::FlatHarmonicFunc
• tolerance : core::optimization::DFPMinConvergedAbsolute , core::optimization::DFPMinConvergedFractional
• top_ : core::fragment::FragmentIO
• top_netstates_ : core::pack::annealer::MultiCoolAnnealer
• top_to_keep : core::pack::annealer::MultiCoolAnnealer
• topological_match_to_ : core::kinematics::AtomTree
• topological_observers_ : core::kinematics::AtomTree
• topologies_ : core::membrane::MembraneProteinFactory
• topology_ : core::membrane::geometry::EmbeddingFactory , core::scoring::methods::ProQ_Energy
• toroidal : core::scoring::sc::_RESULTS
• torsion : core::pose::rna::RNA_SuiteInfo
• torsion_ : core::id::TorsionID
• torsion_atom_ : core::chemical::AddConnect
• torsion_changes_move_other_monomers_ : core::conformation::symmetry::SymmetryInfo
• torsion_id_ : core::id::TorsionID_Range , core::optimization::DOF_Node
• torsion_id_map_ : core::kinematics::MoveMap
• torsion_params_ : core::scoring::methods::ResidueCartBondedParameters
• torsion_type_map_ : core::kinematics::MoveMap
• torsions_ : core::fragment::BBTorsionSRFD
• torsions_indep_ : core::scoring::methods::IdealParametersDatabase
• tot_surf : core::scoring::packing::SurfVol , core::scoring::packing::SurfVolDeriv
• tot_vol : core::scoring::packing::SurfVol , core::scoring::packing::SurfVolDeriv
• total_area : core::scoring::packstat::AreaAccumulator
• total_base_axis_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_base_pair_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_base_stack_axis_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_base_stack_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_base_stagger_score_ : core::scoring::rna::RNA_FilteredBaseBaseInfo
• total_energies_ : core::scoring::Energies
• total_energy_ : core::scoring::Energies , core::scoring::loop_graph::LoopGraph
• total_energy_alternate_state_assignment_ : core::pack::interaction_graph::DensePDInteractionGraph , core::pack::interaction_graph::DoubleDensePDInteractionGraph , core::pack::interaction_graph::DoubleLazyInteractionGraph , core::pack::interaction_graph::FASTERInteractionGraph , core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::LazyInteractionGraph , core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::PDInteractionGraph , core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G > , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• total_energy_current_state_assignment_ : core::pack::interaction_graph::DensePDInteractionGraph , core::pack::interaction_graph::DoubleDensePDInteractionGraph , core::pack::interaction_graph::DoubleLazyInteractionGraph , core::pack::interaction_graph::FASTERInteractionGraph , core::pack::interaction_graph::HPatchInteractionGraph< V, E, G > , core::pack::interaction_graph::LazyInteractionGraph , core::pack::interaction_graph::LinearMemoryInteractionGraph , core::pack::interaction_graph::PDInteractionGraph , core::pack::interaction_graph::SurfaceInteractionGraph< V, E, G > , core::pack::interaction_graph::SymmLinearMemoryInteractionGraph , core::pack::interaction_graph::SymmMinimalistInteractionGraph
• total_exp_chemical_shift_data_points_ : core::scoring::rna::chemical_shift::RNA_ChemicalShiftPotential
• total_helices : core::scoring::Helices
• total_HH_dimer : core::scoring::Helices
• total_hsasa_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::scoring::sasa::SasaCalc
• total_hsasa_sc_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::scoring::sasa::SasaCalc
• total_rel_hsasa_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::scoring::sasa::SasaCalc
• total_residue_ : core::fragment::SecondaryStructure , core::kinematics::ResidueCoordinateChangeList , core::pack::rotamer_set::ContinuousRotamerSets , core::pack::rotamer_set::RotamerSets , core::pack::rotamer_set::RotamerSubsets , core::scoring::solid_surface::SurfaceEnergies
• total_residue_in_span_file_ : core::conformation::membrane::SpanningTopology
• total_rot_ : core::pack::rotamer_set::UnboundRotamersOperation
• total_rotamers_2_unique_rotamers_ : core::scoring::trie::RotamerTrie< AT, CPDATA >
• total_sasa_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::pose::metrics::simple_calculators::SasaCalculatorLegacy , core::scoring::sasa::SasaCalc
• total_sasa_sc_ : core::pose::metrics::simple_calculators::SasaCalculator2 , core::scoring::sasa::SasaCalc
• total_SS_dimer : core::scoring::Strands
• total_strands : core::scoring::Strands
• total_tmhelix_ : core::conformation::membrane::SpanningTopology , core::scoring::MembraneTopology
• totnum_abego_ : core::util::ABEGOManager
• TR_ : core::fragment::picking_old::vall::VallLibrarian
• trace_ : core::scoring::packstat::Event , core::scoring::ResidualDipolarCoupling
• traces_ : core::scoring::packstat::Slice
• trajectory_ : core::pack::annealer::DebuggingAnnealer
• trajectory_file_name_ : core::pack::annealer::FixbbSimAnnealer
• trans_chi4_mean_ : core::scoring::methods::ProClosureEnergy
• trans_chi4_sd_ : core::scoring::methods::ProClosureEnergy
• TRANS_X : core::kinematics::Jump
• TRANS_Y : core::kinematics::Jump
• TRANS_Z : core::kinematics::Jump
• translation : core::kinematics::RT
• translation_matrices_ : core::conformation::symmetry::SymmData
• trie_ : core::scoring::trie::RotamerTrie< AT, CPDATA >
• tries_ : core::scoring::trie::TrieCollection
• trimmedArea : core::scoring::sc::_RESULTS
• Tsymm_ : core::conformation::symmetry::SymmetricConformation
• twelveA_ : core::scoring::TwelveANeighborGraph
• twelveA_squared_ : core::scoring::TwelveANeighborGraph
• twin_law_ : core::scoring::cryst::PhenixInterface
• two_body_energies_ : core::pack::interaction_graph::DensePDEdge , core::pack::interaction_graph::DoubleDensePDEdge , core::pack::interaction_graph::DoubleLazyEdge , core::pack::interaction_graph::FASTEREdge , core::pack::interaction_graph::LazyEdge , core::pack::interaction_graph::PDEdge
• twobody_enmeths_ : core::scoring::MinimizationEdge , core::scoring::MinimizationNode
• twoD_histogram_ : core::scoring::orbitals::OrbitalsStatistics
• tX_ : core::grid::CartGrid< T >
• tY_ : core::grid::CartGrid< T >
• type : core::io::pdb::Field , core::io::raw_data::DisulfideFile::ResNum , core::scoring::packstat::SimplePDB_Atom , core::scoring::sc::_DOT , Entry
• type1_id_ : core::scoring::constraints::NamedAtomPairConstraint
• type2_id_ : core::scoring::constraints::NamedAtomPairConstraint
• type_ : core::chemical::ICoorAtomID , core::chemical::sdf::atomTyper , core::conformation::Atom , core::conformation::orbitals::OrbitalXYZCoords , core::conformation::symmetry::SymmetryInfo , core::id::DOF_ID , core::id::TorsionID , core::scoring::constraints::BoundFunc , core::scoring::DC , core::scoring::methods::UnfoldedStateEnergy , core::scoring::RDC , core::scoring::RDC_Rohl , core::sequence::Cell , core::sequence::ScoringScheme
• type_map_ : core::scoring::packstat::AtomRadiusMap
• types_ : core::chemical::Patch
• tZ_ : core::grid::CartGrid< T >