- r -

• R : core::scoring
• Rama2BOffsetCOP : core::scoring
• Rama2BOffsetEnergyAP : core::scoring::methods
• Rama2BOffsetEnergyCAP : core::scoring::methods
• Rama2BOffsetEnergyCOP : core::scoring::methods
• Rama2BOffsetEnergyOP : core::scoring::methods
• Rama2BOffsetOP : core::scoring
• Ramachandran2BCOP : core::scoring
• Ramachandran2BOP : core::scoring
• RamachandranCOP : core::scoring
• RamachandranEnergy2BCOP : core::scoring::methods
• RamachandranEnergy2BOP : core::scoring::methods
• RamachandranEnergyCOP : core::scoring::methods
• RamachandranEnergyOP : core::scoring::methods
• RamachandranOP : core::scoring
• Range : core::fragment
• RawStructOP : core::io::raw_data
• ReadResfileOP : core::pack::task::operation
• Real : core
• Real3 : core::pack::dunbrack
• Real4 : core::pack::dunbrack
• RealArrayPoolCOP : core::graph
• RealArrayPoolOP : core::graph
• RealCIter : core::scoring::packstat
• RealIter : core::scoring::packstat
• RealResidueAdjacentIter : core::chemical
• RealResidueAdjacentIterPair : core::chemical
• RealResidueED : core::chemical
• RealResidueEIter : core::chemical
• RealResidueGraph : core::chemical
• RealResidueOutEdgeIter : core::chemical
• RealResidueOutEdgeIterPair : core::chemical
• RealResidueVD : core::chemical
• RealResidueVIter : core::chemical
• RealResidueVIterPair : core::chemical
• Reals : core::scoring::packstat
• Record : core::io::pdb
• RecordRef : core::io::pdb
• ReferenceEnergyCOP : core::scoring::methods
• ReferenceEnergyNoncanonicalCOP : core::scoring::methods
• ReferenceEnergyNoncanonicalOP : core::scoring::methods
• ReferenceEnergyOP : core::scoring::methods
• RefTag : core::import_pose::atom_tree_diffs
• RefTags : core::import_pose::atom_tree_diffs
• RemarksOP : core::pose
• ReplicateTaskAP : core::pack::task::operation
• ReplicateTaskCAP : core::pack::task::operation
• ReplicateTaskCOP : core::pack::task::operation
• ReplicateTaskOP : core::pack::task::operation
• ResfileCommandCOP : core::pack::task
• ResfileCommandOP : core::pack::task
• ResfileContentsCOP : core::pack::task
• ResfileContentsOP : core::pack::task
• ResFilterCOP : core::pack::task::operation
• ResFilterCreatorCOP : core::pack::task::operation
• ResFilterCreatorOP : core::pack::task::operation
• ResFilterFactoryCOP : core::pack::task::operation
• ResFilterFactoryOP : core::pack::task::operation
• ResFilterOP : core::pack::task::operation
• ResidualDipolarCoupling_RohlCOP : core::scoring
• ResidualDipolarCoupling_RohlOP : core::scoring
• ResidualDipolarCouplingCOP : core::scoring
• ResidualDipolarCouplingEnergyOP : core::scoring::methods
• ResidualDipolarCouplingEnergyRigidSegmentsOP : core::scoring::methods
• ResidualDipolarCouplingOP : core::scoring
• ResidueAP : core::conformation
• ResidueAtomTreeCollectionCOP : core::pack::scmin
• ResidueAtomTreeCollectionMomentoCOP : core::pack::scmin
• ResidueAtomTreeCollectionMomentoOP : core::pack::scmin
• ResidueAtomTreeCollectionOP : core::pack::scmin
• ResidueCAP : core::conformation
• ResidueCAPs : core::conformation
• ResidueCartBondedParametersAP : core::scoring::methods
• ResidueCartBondedParametersCAP : core::scoring::methods
• ResidueCartBondedParametersCOP : core::scoring::methods
• ResidueCartBondedParametersOP : core::scoring::methods
• ResidueConstraintsCOP : core::scoring::constraints
• ResidueConstraintsOP : core::scoring::constraints
• ResidueCoordinateChangeListOP : core::kinematics
• ResidueCOP : core::conformation
• ResidueCOPs : core::conformation
• ResidueGraph : core::chemical
• ResidueHasPropertyOP : core::pack::task::operation
• ResidueIndexIsntOP : core::pack::task::operation
• ResidueIndexIsOP : core::pack::task::operation
• ResidueIndexList : core::kinematics
• ResidueIndexSelectorCOP : core::pack::task::residue_selector
• ResidueIndexSelectorOP : core::pack::task::residue_selector
• ResidueKinWriterCOP : core::conformation
• ResidueKinWriterOP : core::conformation
• ResidueLacksPropertyOP : core::pack::task::operation
• ResidueListIterator : core::kinematics
• ResidueMatcherCOP : core::conformation
• ResidueMatcherOP : core::conformation
• ResidueName3IsntOP : core::pack::task::operation
• ResidueName3IsOP : core::pack::task::operation
• ResidueNblistDataCOP : core::scoring
• ResidueNblistDataOP : core::scoring
• ResidueNeighborConstIteratorCOP : core::scoring
• ResidueNeighborConstIteratorOP : core::scoring
• ResidueNeighborIteratorCOP : core::scoring
• ResidueNeighborIteratorOP : core::scoring
• ResidueOP : core::conformation
• ResidueOPs : core::conformation
• ResiduePairNeighborListCOP : core::scoring
• ResiduePairNeighborListOP : core::scoring
• ResiduePDBIndexIsntOP : core::pack::task::operation
• ResiduePDBIndexIsOP : core::pack::task::operation
• ResiduePDBInfoHasLabelOP : core::pack::task::operation
• ResidueSelection : core::scoring
• ResidueSelectionVector : core::scoring
• ResidueSelectorAP : core::pack::task::residue_selector
• ResidueSelectorCAP : core::pack::task::residue_selector
• ResidueSelectorCOP : core::pack::task::residue_selector
• ResidueSelectorCreatorCOP : core::pack::task::residue_selector
• ResidueSelectorCreatorOP : core::pack::task::residue_selector
• ResidueSelectorOP : core::chemical , core::pack::task::residue_selector
• ResidueSelectorSingleOP : core::chemical
• ResidueSubset : core::pack::task::residue_selector
• ResidueTypeAP : core::chemical
• ResidueTypeCAP : core::chemical
• ResidueTypeCAPs : core::chemical
• ResidueTypeConstraintCOP : core::scoring::constraints
• ResidueTypeConstraintOP : core::scoring::constraints
• ResidueTypeCOP : core::chemical
• ResidueTypeCOPs : core::chemical
• ResidueTypeKinWriterCOP : core::chemical
• ResidueTypeKinWriterOP : core::chemical
• ResidueTypeLinkingConstraintCOP : core::scoring::constraints
• ResidueTypeLinkingConstraintOP : core::scoring::constraints
• ResidueTypeOP : core::chemical
• ResidueTypeOPs : core::chemical
• ResidueTypeSetCAP : core::chemical
• ResidueTypeSetOP : core::chemical
• ResLvlTaskOperationCOP : core::pack::task::operation
• ResLvlTaskOperationCreatorCOP : core::pack::task::operation
• ResLvlTaskOperationCreatorOP : core::pack::task::operation
• ResLvlTaskOperationFactoryCOP : core::pack::task::operation
• ResLvlTaskOperationFactoryOP : core::pack::task::operation
• ResLvlTaskOperationOP : core::pack::task::operation
• ResMap : core::pose
• RespairInteractionsCOP : core::scoring::custom_pair_distance
• RespairInteractionsOP : core::scoring::custom_pair_distance
• ResPairMinimizationDataCOP : core::scoring
• ResPairMinimizationDataOP : core::scoring
• ResSingleMinimizationDataCOP : core::scoring
• ResSingleMinimizationDataOP : core::scoring
• RestrictAbsentCanonicalAASOP : core::pack::task::operation
• RestrictAbsentCanonicalAASRLTOP : core::pack::task::operation
• RestrictResidueToRepackingOP : core::pack::task::operation
• RestrictToRepackingOP : core::pack::task::operation
• RestrictToRepackingRLTOP : core::pack::task::operation
• RESULTS : core::scoring::sc
• RG_Local_MinDataOP : core::scoring::methods
• RG_MinDataOP : core::scoring::methods
• RingConformerSetCOP : core::chemical
• RingConformerSetOP : core::chemical
• RNA_AtomVDWCOP : core::scoring::rna
• RNA_AtomVDWOP : core::scoring::rna
• RNA_CentroidInfoOP : core::scoring::rna
• RNA_Data : core::scoring::rna
• RNA_DataInfoAP : core::scoring::rna
• RNA_DataInfoOP : core::scoring::rna
• RNA_FilteredBaseBaseInfoOP : core::scoring::rna
• RNA_FittedTorsionInfoOP : core::chemical::rna
• RNA_FullAtomVDW_BasePhosphateCOP : core::scoring::rna
• RNA_FullAtomVDW_BasePhosphateOP : core::scoring::rna
• RNA_IdealCoordOP : core::pose::rna
• RNA_LowResolutionPotentialOP : core::scoring::rna
• RNA_Mg_KnowledgeBasedPotentialCOP : core::scoring::rna
• RNA_Mg_KnowledgeBasedPotentialOP : core::scoring::rna
• RNA_RawBaseBaseInfoAP : core::scoring::rna
• RNA_RawBaseBaseInfoOP : core::scoring::rna
• RNA_ResidueLevelTaskCOP : core::pack::task::rna
• RNA_ResidueLevelTaskOP : core::pack::task::rna
• RNA_ResidueTypeAP : core::chemical::rna
• RNA_ResidueTypeCAP : core::chemical::rna
• RNA_ResidueTypeCOP : core::chemical::rna
• RNA_ResidueTypeOP : core::chemical::rna
• RNA_ScoringInfoOP : core::scoring::rna
• RNA_SilentStructOP : core::io::silent
• RNA_SugarCloseEnergyCOP : core::scoring::rna
• RNA_SugarCloseEnergyOP : core::scoring::rna
• RNA_SuiteNameOP : core::pose::rna
• RNA_TorsionEnergyCOP : core::scoring::rna
• RNA_TorsionEnergyOP : core::scoring::rna
• RNA_TorsionPotentialCOP : core::scoring::rna
• RNA_TorsionPotentialOP : core::scoring::rna
• Rot : core::scoring::packstat
• RotamerAssigningAnnealerOP : core::pack::annealer
• RotamerBin : core::pack::rotamer_set
• RotamerBins : core::pack::rotamer_set
• RotamerConstraintCOP : core::pack::dunbrack
• RotamerConstraintOP : core::pack::dunbrack
• RotamerCouplingsCOP : core::pack::rotamer_set
• RotamerCouplingsOP : core::pack::rotamer_set
• RotamerDotsCOP : core::pack::interaction_graph
• RotamerDotsOP : core::pack::interaction_graph
• RotamerExplosionOP : core::pack::task::operation
• RotamerLibraryCOP : core::pack::dunbrack
• RotamerLibraryOP : core::pack::dunbrack
• RotamerLibraryScratchSpaceCOP : core::pack::dunbrack
• RotamerLibraryScratchSpaceOP : core::pack::dunbrack
• RotamerLinksCOP : core::pack::rotamer_set
• RotamerLinksOP : core::pack::rotamer_set
• RotamerOperationCOP : core::pack::rotamer_set
• RotamerOperationOP : core::pack::rotamer_set
• RotamerOperations : core::pack::rotamer_set
• Rotamers : core::pack::rotamer_set
• RotamerSetBaseCOP : core::conformation
• RotamerSetBaseOP : core::conformation
• RotamerSetCOP : core::pack::rotamer_set
• RotamerSetFactoryOP : core::pack::rotamer_set
• RotamerSetOP : core::pack::rotamer_set
• RotamerSetOperationCOP : core::pack::rotamer_set
• RotamerSetOperationOP : core::pack::rotamer_set
• RotamerSetsBaseCOP : core::pack::rotamer_set
• RotamerSetsBaseOP : core::pack::rotamer_set
• RotamerSetsCOP : core::pack::rotamer_set
• RotamerSetsOP : core::pack::rotamer_set
• RotamerSetVector : core::pack::rotamer_set::symmetry
• RotamerSubsetsCOP : core::pack::rotamer_set
• RotamerSubsetsOP : core::pack::rotamer_set
• RotamerTrieBaseCOP : core::scoring::trie
• RotamerTrieBaseOP : core::scoring::trie
• RotamerVector : core::pack::dunbrack
• RotPair : core::scoring::packstat
• RotSetOperationList : core::pack::rotamer_set
• RotSetOperationListIterator : core::pack::rotamer_set
• RotVector : core::pack::dunbrack
• RTAP : core::kinematics
• RTOP : core::kinematics
• RuleAP : core::coarse
• RuleCAP : core::coarse
• RuleCOP : core::coarse
• RuleOP : core::coarse
• RuleSetCOP : core::coarse
• RuleSetOP : core::coarse
• rvec : core::scoring
• rvec5 : core::scoring