PhosphateUtil.cc File Reference

#include <protocols/stepwise/sampling/rna/phosphate/PhosphateUtil.hh>
#include <protocols/stepwise/sampling/rna/phosphate/PhosphateMove.hh>
#include <protocols/stepwise/StepWiseUtil.hh>
#include <core/chemical/rna/RNA_Util.hh>
#include <core/chemical/VariantType.hh>
#include <core/conformation/ResidueFactory.hh>
#include <core/id/TorsionID.hh>
#include <core/pose/Pose.hh>
#include <core/pose/util.hh>
#include <numeric/conversions.hh>
#include <numeric/xyz.functions.hh>
#include <basic/Tracer.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::stepwise
	protocols::stepwise::sampling
	protocols::stepwise::sampling::rna
	protocols::stepwise::sampling::rna::phosphate

Functions
void	protocols::stepwise::sampling::rna::phosphate::remove_terminal_phosphates (pose::Pose &pose)
void	protocols::stepwise::sampling::rna::phosphate::remove_terminal_phosphates (pose::Pose &pose, utility::vector1< Size > const &res_list)
void	protocols::stepwise::sampling::rna::phosphate::correctly_position_five_prime_phosphate_SLOW (pose::Pose &pose, Size const res)
void	protocols::stepwise::sampling::rna::phosphate::correctly_position_five_prime_phosphate (pose::Pose &pose, Size const res)
void	protocols::stepwise::sampling::rna::phosphate::copy_over_phosphate_variants (pose::Pose &pose_input, pose::Pose const &reference_pose, utility::vector1< PhosphateMove > const &phosphate_move_list)
void	protocols::stepwise::sampling::rna::phosphate::copy_over_phosphate_variants (pose::Pose &pose_input, pose::Pose const &reference_pose, utility::vector1< Size > const &res_list)

Variables
static basic::Tracer	TR ("protocols.stepwise.sampling.rna.phosphate.PhosphateUtil")

Detailed Description

Detailed:

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu

Variable Documentation

basic::Tracer TR("protocols.stepwise.sampling.rna.phosphate.PhosphateUtil")

static