protocols::multistate_design::MultiStateEntity< T > Class Template Reference

#include <MultiStateEntity.hh>

Public Types
typedef genetic_algorithm::Entity::OP	EntityOP
typedef genetic_algorithm::EntityElementOP	EntityElementOP
Public Types inherited from protocols::genetic_algorithm::Entity
typedef utility::pointer::owning_ptr < Entity >	OP
typedef utility::pointer::owning_ptr < Entity const >	COP
typedef utility::pointer::access_ptr < Entity const >	CAP
typedef utility::vector1< COP >	COPs
typedef utility::vector1< CAP >	CAPs

Public Member Functions
	MultiStateEntity ()
	MultiStateEntity (MultiStateEntity const &entity)
virtual	~MultiStateEntity ()
virtual EntityOP	clone () const
virtual void	show (std::ostream &os) const
virtual void	write_checkpoint (std::ostream &os) const
virtual bool	read_checkpoint (std::istream &is)
utility::vector1 < SingleStateEntityData > const &	single_state_entity_data () const
utility::vector1 < SingleStateEntityData > &	single_state_entity_data ()
Public Member Functions inherited from protocols::genetic_algorithm::Entity
	Entity ()
	Entity (Entity const &entity)
Entity const &	operator= (Entity const &)
virtual	~Entity ()
	Entity (std::string const &line)
virtual void	set_traits_size (core::Size size)
virtual void	set_traits (EntityElements const &traits)
virtual EntityElements const &	traits () const
virtual void	set_entity_element (core::Size index, EntityElementOP element)
virtual void	set_fitness (core::Real val)
virtual core::Real	fitness () const
virtual bool	fitness_valid () const
virtual bool	operator== (Entity const &other) const
virtual bool	operator< (Entity const &other) const
virtual std::string	to_string () const
virtual std::string	traits_string () const

Private Attributes
utility::vector1 < SingleStateEntityData >	single_state_entity_data_

Member Typedef Documentation

template<typename T >

typedef genetic_algorithm::EntityElementOP protocols::multistate_design::MultiStateEntity< T >::EntityElementOP

template<typename T >

typedef genetic_algorithm::Entity::OP protocols::multistate_design::MultiStateEntity< T >::EntityOP

Constructor & Destructor Documentation

template<typename T >

protocols::multistate_design::MultiStateEntity< T >::MultiStateEntity

(

)

Referenced by protocols::multistate_design::MultiStateEntity< T >::clone().

template<typename T >

protocols::multistate_design::MultiStateEntity< T >::MultiStateEntity

(

MultiStateEntity< T > const &

entity

)

template<typename T >

protocols::multistate_design::MultiStateEntity< T >::~MultiStateEntity ( )

virtual

Member Function Documentation

template<typename T >

MultiStateEntity::EntityOP protocols::multistate_design::MultiStateEntity< T >::clone ( ) const

virtual

Reimplemented from protocols::genetic_algorithm::Entity.

References protocols::multistate_design::MultiStateEntity< T >::MultiStateEntity().

template<typename T >

bool protocols::multistate_design::MultiStateEntity< T >::read_checkpoint ( std::istream &  is )

virtual

Reimplemented from protocols::genetic_algorithm::Entity.

References protocols::genetic_algorithm::Entity::read_checkpoint(), and protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data_.

template<typename T >

void protocols::multistate_design::MultiStateEntity< T >::show ( std::ostream &  os ) const

virtual

Reimplemented from protocols::genetic_algorithm::Entity.

References end, protocols::genetic_algorithm::Entity::fitness(), seq, protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data_, and protocols::genetic_algorithm::Entity::traits().

template<typename T >

utility::vector1< SingleStateEntityData > const & protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data

(

)

const

References protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data_.

Referenced by protocols::multistate_design::MultiStateFitnessFunction::evaluate(), and protocols::multistate_design::MultiStatePacker::evaluate().

template<typename T >

utility::vector1< SingleStateEntityData > & protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data

(

)

References protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data_.

template<typename T >

void protocols::multistate_design::MultiStateEntity< T >::write_checkpoint ( std::ostream &  os ) const

virtual

Reimplemented from protocols::genetic_algorithm::Entity.

References protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data_, and protocols::genetic_algorithm::Entity::write_checkpoint().

Member Data Documentation

template<typename T >

utility::vector1< SingleStateEntityData > protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data_

private

Referenced by protocols::multistate_design::MultiStateEntity< T >::read_checkpoint(), protocols::multistate_design::MultiStateEntity< T >::show(), protocols::multistate_design::MultiStateEntity< T >::single_state_entity_data(), and protocols::multistate_design::MultiStateEntity< T >::write_checkpoint().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/multistate_design/MultiStateEntity.fwd.hh
• symlinks/rosetta/src/protocols/multistate_design/MultiStateEntity.hh
• symlinks/rosetta/src/protocols/multistate_design/MultiStateEntity.cc