protocols::toolbox::task_operations Namespace Reference

Classes
class	CrystalContactsOperation
class	CrystalContactsOperationCreator
class	DatabaseThread
class	DatabaseThreadCreator
class	DesignAroundOperation
class	DesignAroundOperationCreator
class	DockingNoRepack1
class	DockingNoRepack2
class	ImportUnboundRotamersOperation
class	ImportUnboundRotamersOperationCreator
class	InterfaceTaskOperation
class	JointSequenceOperation
class	JointSequenceOperationCreator
class	LayerOperations
class	LimitAromaChi2_RotamerSetOperation
class	LimitAromaChi2Operation
class	LimitAromaChi2OperationCreator
class	LinkResidues
class	LinkResiduesCreator
class	ModifyAnnealer
class	ModifyAnnealerCreator
class	PreventChainFromRepackingOperation
class	PreventChainFromRepackingOperationCreator
class	PreventResiduesFromRepackingOperation
class	PreventResiduesFromRepackingOperationCreator
class	ProteinCore
class	ProteinCoreFilterCreator
class	ProteinInterfaceDesignOperation
class	ProteinInterfaceDesignOperationCreator
class	ReadResfileFromDB
class	ReadResfileFromDBCreator
class	RestrictByCalculatorsOperation
class	RestrictByCalculatorsOperationCreator
class	RestrictChainToRepackingOperation
class	RestrictChainToRepackingOperationCreator
class	RestrictConservedLowDdgOperation
	a Task operation that will check whether the amino acid at a position is conserved in the sequence profile and has an unfavorable ddG when mutated to ala. all positions that match this criterion will get set to repacking. More...
class	RestrictConservedLowDdgOperationCreator
class	RestrictIdentitiesAtAlignedPositionsOperation
class	RestrictIdentitiesAtAlignedPositionsOperationCreator
class	RestrictInterGroupVectorOperation
class	RestrictInterGroupVectorOperationCreator
class	RestrictNativeResiduesOperation
class	RestrictNativeResiduesOperationCreator
class	RestrictNonSurfaceToRepackingOperation
class	RestrictNonSurfaceToRepackingOperationCreator
class	RestrictOperationsBase
class	RestrictResiduesToRepackingOperation
class	RestrictResiduesToRepackingOperationCreator
class	RestrictToAlignedSegmentsOperation
class	RestrictToAlignedSegmentsOperationCreator
class	RestrictToCDRH3Loop
class	RestrictToCDRH3LoopCreator
class	RestrictToInterface
class	RestrictToInterfaceCreator
class	RestrictToInterfaceOperation
class	RestrictToInterfaceOperationCreator
class	RestrictToInterfaceVectorOperation
class	RestrictToInterfaceVectorOperationCreator
class	RestrictToLoopsAndNeighbors
class	RestrictToLoopsAndNeighborsCreator
class	RestrictToMoveMapChiOperation
	A TaskOperation that accepts a movemap and restricts chi that are false to either packing or design. Does not turn anything on, just like the rest of the RestrictTo operations. More...
class	RestrictToNeighborhoodOperation
class	RestrictToNeighborhoodOperationCreator
class	RestrictToTerminiOperation
class	RestrictToTerminiOperationCreator
class	SelectByDensityFitOperation
class	SelectByDensityFitOperationCreator
class	SelectBySASAOperation
class	SelectBySASAOperationCreator
class	SelectResiduesWithinChainOperation
class	SelectResiduesWithinChainOperationCreator
class	SeqprofConsensusOperation
class	SeqprofConsensusOperationCreator
class	SetIGTypeOperation
class	SetIGTypeOperationCreator
class	ThreadSequenceOperation
class	ThreadSequenceOperationCreator

Typedefs
typedef utility::pointer::owning_ptr < CrystalContactsOperation >	CrystalContactsOperationOP
typedef utility::pointer::owning_ptr < CrystalContactsOperation const >	CrystalContactsOperationCOP
typedef utility::pointer::owning_ptr < DatabaseThread >	DatabaseThreadOP
typedef utility::pointer::owning_ptr < DatabaseThread const >	DatabaseThreadCOP
typedef utility::pointer::owning_ptr < DesignAroundOperation >	DesignAroundOperationOP
typedef utility::pointer::owning_ptr < DesignAroundOperation const >	DesignAroundOperationCOP
typedef utility::pointer::owning_ptr < ImportUnboundRotamersOperation >	ImportUnboundRotamersOperationOP
typedef utility::pointer::owning_ptr < ImportUnboundRotamersOperation const >	ImportUnboundRotamersOperationCOP
typedef utility::pointer::owning_ptr < InterfaceTaskOperation >	InterfaceTaskOperationOP
typedef utility::pointer::owning_ptr < InterfaceTaskOperation >	InterfaceTaskOperationCOP
typedef utility::pointer::owning_ptr < JointSequenceOperation >	JointSequenceOperationOP
typedef utility::pointer::owning_ptr < LimitAromaChi2_RotamerSetOperation >	LimitAromaChi2_RotamerSetOperationOP
typedef utility::pointer::owning_ptr < LimitAromaChi2_RotamerSetOperation const >	LimitAromaChi2_RotamerSetOperationCOP
typedef utility::pointer::owning_ptr < LimitAromaChi2Operation >	LimitAromaChi2OperationOP
typedef utility::pointer::owning_ptr < LimitAromaChi2Operation const >	LimitAromaChi2OperationCOP
typedef utility::pointer::owning_ptr < LinkResidues >	LinkResiduesOP
typedef utility::pointer::owning_ptr < LinkResidues const >	LinkResiduesCOP
typedef utility::pointer::owning_ptr < ModifyAnnealer >	ModifyAnnealerOP
typedef utility::pointer::owning_ptr < ModifyAnnealer const >	ModifyAnnealerCOP
typedef utility::pointer::owning_ptr < PreventChainFromRepackingOperation >	PreventChainFromRepackingOperationOP
typedef utility::pointer::owning_ptr < PreventChainFromRepackingOperation const >	PreventChainFromRepackingOperationCOP
typedef utility::pointer::owning_ptr < PreventResiduesFromRepackingOperation >	PreventResiduesFromRepackingOperationOP
typedef utility::pointer::owning_ptr < PreventResiduesFromRepackingOperation const >	PreventResiduesFromRepackingOperationCOP
typedef utility::pointer::owning_ptr < ProteinInterfaceDesignOperation >	ProteinInterfaceDesignOperationOP
typedef utility::pointer::owning_ptr < ProteinInterfaceDesignOperation const >	ProteinInterfaceDesignOperationCOP
typedef utility::pointer::owning_ptr < ReadResfileFromDB >	ReadResfileFromDBOP
typedef utility::pointer::owning_ptr < RestrictByCalculatorsOperation >	RestrictByCalculatorsOperationOP
typedef utility::pointer::owning_ptr < RestrictByCalculatorsOperation const >	RestrictByCalculatorsOperationCOP
typedef utility::pointer::owning_ptr < RestrictChainToRepackingOperation >	RestrictChainToRepackingOperationOP
typedef utility::pointer::owning_ptr < RestrictChainToRepackingOperation const >	RestrictChainToRepackingOperationCOP
typedef utility::pointer::owning_ptr < RestrictIdentitiesAtAlignedPositionsOperation >	RestrictIdentitiesAtAlignedPositionsOperationOP
typedef utility::pointer::owning_ptr < RestrictIdentitiesAtAlignedPositionsOperation const >	RestrictIdentitiesAtAlignedPositionsOperationCOP
typedef utility::pointer::owning_ptr < RestrictInterGroupVectorOperation >	RestrictInterGroupVectorOperationOP
typedef utility::pointer::owning_ptr < RestrictInterGroupVectorOperation const >	RestrictInterGroupVectorOperationCOP
typedef utility::pointer::owning_ptr < RestrictNativeResiduesOperation >	RestrictNativeResiduesOperationOP
typedef utility::pointer::owning_ptr < RestrictNonSurfaceToRepackingOperation >	RestrictNonSurfaceToRepackingOperationOP
typedef utility::pointer::owning_ptr < RestrictOperationsBase >	RestrictOperationsBaseOP
typedef utility::pointer::owning_ptr < RestrictOperationsBase const >	RestrictOperationsBaseCOP
typedef utility::pointer::owning_ptr < RestrictResiduesToRepackingOperation >	RestrictResiduesToRepackingOperationOP
typedef utility::pointer::owning_ptr < RestrictResiduesToRepackingOperation const >	RestrictResiduesToRepackingOperationCOP
typedef utility::pointer::owning_ptr < RestrictToAlignedSegmentsOperation >	RestrictToAlignedSegmentsOperationOP
typedef utility::pointer::owning_ptr < RestrictToAlignedSegmentsOperation const >	RestrictToAlignedSegmentsOperationCOP
typedef utility::pointer::owning_ptr < RestrictToCDRH3Loop >	RestrictToCDRH3LoopOP
typedef utility::pointer::owning_ptr < RestrictToInterface >	RestrictToInterfaceOP
typedef utility::pointer::owning_ptr < RestrictToInterface >	RestrictToInterfaceCOP
typedef utility::pointer::owning_ptr < RestrictToInterfaceOperation >	RestrictToInterfaceOperationOP
typedef utility::pointer::owning_ptr < RestrictToInterfaceOperation const >	RestrictToInterfaceOperationCOP
typedef utility::pointer::owning_ptr < RestrictToInterfaceVectorOperation >	RestrictToInterfaceVectorOperationOP
typedef utility::pointer::owning_ptr < RestrictToInterfaceVectorOperation const >	RestrictToInterfaceVectorOperationCOP
typedef utility::pointer::owning_ptr < RestrictToLoopsAndNeighbors >	RestrictToLoopsAndNeighborsOP
typedef utility::pointer::owning_ptr < RestrictToMoveMapChiOperation >	RestrictToMoveMapChiOperationOP
typedef utility::pointer::owning_ptr < RestrictToNeighborhoodOperation >	RestrictToNeighborhoodOperationOP
typedef utility::pointer::owning_ptr < RestrictToNeighborhoodOperation const >	RestrictToNeighborhoodOperationCOP
typedef utility::pointer::owning_ptr < RestrictToTerminiOperation >	RestrictToTerminiOperationOP
typedef utility::pointer::owning_ptr < RestrictToTerminiOperation const >	RestrictToTerminiOperationCOP
typedef utility::pointer::owning_ptr < SelectByDensityFitOperation >	SelectByDensityFitOperationOP
typedef utility::pointer::owning_ptr < SelectByDensityFitOperation const >	SelectByDensityFitOperationCOP
typedef utility::pointer::owning_ptr < SelectBySASAOperation >	SelectBySASAOperationOP
typedef utility::pointer::owning_ptr < SelectBySASAOperation const >	SelectBySASAOperationCOP
typedef utility::pointer::owning_ptr < SelectResiduesWithinChainOperation >	SelectResiduesWithinChainOperationOP
typedef utility::pointer::owning_ptr < SelectResiduesWithinChainOperation const >	SelectResiduesWithinChainOperationCOP
typedef utility::pointer::owning_ptr < SeqprofConsensusOperation >	SeqprofConsensusOperationOP
typedef utility::pointer::owning_ptr < RestrictConservedLowDdgOperation >	RestrictConservedLowDdgOperationOP
typedef utility::pointer::owning_ptr < SetIGTypeOperation >	SetIGTypeOperationOP
typedef utility::pointer::owning_ptr < SetIGTypeOperation const >	SetIGTypeOperationCOP
typedef utility::pointer::owning_ptr < ThreadSequenceOperation >	ThreadSequenceOperationOP
typedef utility::pointer::owning_ptr < ThreadSequenceOperation const >	ThreadSequenceOperationCOP

Functions
bool	is_part (utility::vector1< core::Size > vec, core::Size pos)

Typedef Documentation

typedef utility::pointer::owning_ptr< CrystalContactsOperation const > protocols::toolbox::task_operations::CrystalContactsOperationCOP

typedef utility::pointer::owning_ptr< CrystalContactsOperation > protocols::toolbox::task_operations::CrystalContactsOperationOP

typedef utility::pointer::owning_ptr< DatabaseThread const > protocols::toolbox::task_operations::DatabaseThreadCOP

typedef utility::pointer::owning_ptr< DatabaseThread > protocols::toolbox::task_operations::DatabaseThreadOP

typedef utility::pointer::owning_ptr< DesignAroundOperation const > protocols::toolbox::task_operations::DesignAroundOperationCOP

typedef utility::pointer::owning_ptr< DesignAroundOperation > protocols::toolbox::task_operations::DesignAroundOperationOP

typedef utility::pointer::owning_ptr< ImportUnboundRotamersOperation const > protocols::toolbox::task_operations::ImportUnboundRotamersOperationCOP

typedef utility::pointer::owning_ptr< ImportUnboundRotamersOperation > protocols::toolbox::task_operations::ImportUnboundRotamersOperationOP

typedef utility::pointer::owning_ptr< InterfaceTaskOperation > protocols::toolbox::task_operations::InterfaceTaskOperationCOP

typedef utility::pointer::owning_ptr< InterfaceTaskOperation > protocols::toolbox::task_operations::InterfaceTaskOperationOP

typedef utility::pointer::owning_ptr< JointSequenceOperation > protocols::toolbox::task_operations::JointSequenceOperationOP

typedef utility::pointer::owning_ptr< LimitAromaChi2_RotamerSetOperation const > protocols::toolbox::task_operations::LimitAromaChi2_RotamerSetOperationCOP

typedef utility::pointer::owning_ptr< LimitAromaChi2_RotamerSetOperation > protocols::toolbox::task_operations::LimitAromaChi2_RotamerSetOperationOP

typedef utility::pointer::owning_ptr< LimitAromaChi2Operation const > protocols::toolbox::task_operations::LimitAromaChi2OperationCOP

typedef utility::pointer::owning_ptr< LimitAromaChi2Operation > protocols::toolbox::task_operations::LimitAromaChi2OperationOP

typedef utility::pointer::owning_ptr< LinkResidues const > protocols::toolbox::task_operations::LinkResiduesCOP

typedef utility::pointer::owning_ptr< LinkResidues > protocols::toolbox::task_operations::LinkResiduesOP

typedef utility::pointer::owning_ptr< ModifyAnnealer const > protocols::toolbox::task_operations::ModifyAnnealerCOP

typedef utility::pointer::owning_ptr< ModifyAnnealer > protocols::toolbox::task_operations::ModifyAnnealerOP

typedef utility::pointer::owning_ptr< PreventChainFromRepackingOperation const > protocols::toolbox::task_operations::PreventChainFromRepackingOperationCOP

typedef utility::pointer::owning_ptr< PreventChainFromRepackingOperation > protocols::toolbox::task_operations::PreventChainFromRepackingOperationOP

typedef utility::pointer::owning_ptr< PreventResiduesFromRepackingOperation const > protocols::toolbox::task_operations::PreventResiduesFromRepackingOperationCOP

typedef utility::pointer::owning_ptr< PreventResiduesFromRepackingOperation > protocols::toolbox::task_operations::PreventResiduesFromRepackingOperationOP

typedef utility::pointer::owning_ptr< ProteinInterfaceDesignOperation const > protocols::toolbox::task_operations::ProteinInterfaceDesignOperationCOP

typedef utility::pointer::owning_ptr< ProteinInterfaceDesignOperation > protocols::toolbox::task_operations::ProteinInterfaceDesignOperationOP

typedef utility::pointer::owning_ptr< ReadResfileFromDB > protocols::toolbox::task_operations::ReadResfileFromDBOP

typedef utility::pointer::owning_ptr< RestrictByCalculatorsOperation const > protocols::toolbox::task_operations::RestrictByCalculatorsOperationCOP

typedef utility::pointer::owning_ptr< RestrictByCalculatorsOperation > protocols::toolbox::task_operations::RestrictByCalculatorsOperationOP

typedef utility::pointer::owning_ptr< RestrictChainToRepackingOperation const > protocols::toolbox::task_operations::RestrictChainToRepackingOperationCOP

typedef utility::pointer::owning_ptr< RestrictChainToRepackingOperation > protocols::toolbox::task_operations::RestrictChainToRepackingOperationOP

typedef utility::pointer::owning_ptr< RestrictConservedLowDdgOperation > protocols::toolbox::task_operations::RestrictConservedLowDdgOperationOP

typedef utility::pointer::owning_ptr< RestrictIdentitiesAtAlignedPositionsOperation const > protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperationCOP

typedef utility::pointer::owning_ptr< RestrictIdentitiesAtAlignedPositionsOperation > protocols::toolbox::task_operations::RestrictIdentitiesAtAlignedPositionsOperationOP

typedef utility::pointer::owning_ptr< RestrictInterGroupVectorOperation const > protocols::toolbox::task_operations::RestrictInterGroupVectorOperationCOP

typedef utility::pointer::owning_ptr< RestrictInterGroupVectorOperation > protocols::toolbox::task_operations::RestrictInterGroupVectorOperationOP

typedef utility::pointer::owning_ptr< RestrictNativeResiduesOperation > protocols::toolbox::task_operations::RestrictNativeResiduesOperationOP

typedef utility::pointer::owning_ptr< RestrictNonSurfaceToRepackingOperation > protocols::toolbox::task_operations::RestrictNonSurfaceToRepackingOperationOP

typedef utility::pointer::owning_ptr< RestrictOperationsBase const > protocols::toolbox::task_operations::RestrictOperationsBaseCOP

typedef utility::pointer::owning_ptr< RestrictOperationsBase > protocols::toolbox::task_operations::RestrictOperationsBaseOP

typedef utility::pointer::owning_ptr< RestrictResiduesToRepackingOperation const > protocols::toolbox::task_operations::RestrictResiduesToRepackingOperationCOP

typedef utility::pointer::owning_ptr< RestrictResiduesToRepackingOperation > protocols::toolbox::task_operations::RestrictResiduesToRepackingOperationOP

typedef utility::pointer::owning_ptr< RestrictToAlignedSegmentsOperation const > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperationCOP

typedef utility::pointer::owning_ptr< RestrictToAlignedSegmentsOperation > protocols::toolbox::task_operations::RestrictToAlignedSegmentsOperationOP

typedef utility::pointer::owning_ptr< RestrictToCDRH3Loop > protocols::toolbox::task_operations::RestrictToCDRH3LoopOP

typedef utility::pointer::owning_ptr< RestrictToInterface > protocols::toolbox::task_operations::RestrictToInterfaceCOP

typedef utility::pointer::owning_ptr< RestrictToInterface > protocols::toolbox::task_operations::RestrictToInterfaceOP

typedef utility::pointer::owning_ptr< RestrictToInterfaceOperation const > protocols::toolbox::task_operations::RestrictToInterfaceOperationCOP

typedef utility::pointer::owning_ptr< RestrictToInterfaceOperation > protocols::toolbox::task_operations::RestrictToInterfaceOperationOP

typedef utility::pointer::owning_ptr< RestrictToInterfaceVectorOperation const > protocols::toolbox::task_operations::RestrictToInterfaceVectorOperationCOP

typedef utility::pointer::owning_ptr< RestrictToInterfaceVectorOperation > protocols::toolbox::task_operations::RestrictToInterfaceVectorOperationOP

typedef utility::pointer::owning_ptr< RestrictToLoopsAndNeighbors > protocols::toolbox::task_operations::RestrictToLoopsAndNeighborsOP

typedef utility::pointer::owning_ptr< RestrictToMoveMapChiOperation > protocols::toolbox::task_operations::RestrictToMoveMapChiOperationOP

typedef utility::pointer::owning_ptr< RestrictToNeighborhoodOperation const > protocols::toolbox::task_operations::RestrictToNeighborhoodOperationCOP

typedef utility::pointer::owning_ptr< RestrictToNeighborhoodOperation > protocols::toolbox::task_operations::RestrictToNeighborhoodOperationOP

typedef utility::pointer::owning_ptr< RestrictToTerminiOperation const > protocols::toolbox::task_operations::RestrictToTerminiOperationCOP

typedef utility::pointer::owning_ptr< RestrictToTerminiOperation > protocols::toolbox::task_operations::RestrictToTerminiOperationOP

typedef utility::pointer::owning_ptr< SelectByDensityFitOperation const > protocols::toolbox::task_operations::SelectByDensityFitOperationCOP

typedef utility::pointer::owning_ptr< SelectByDensityFitOperation > protocols::toolbox::task_operations::SelectByDensityFitOperationOP

typedef utility::pointer::owning_ptr< SelectBySASAOperation const > protocols::toolbox::task_operations::SelectBySASAOperationCOP

typedef utility::pointer::owning_ptr< SelectBySASAOperation > protocols::toolbox::task_operations::SelectBySASAOperationOP

typedef utility::pointer::owning_ptr< SelectResiduesWithinChainOperation const > protocols::toolbox::task_operations::SelectResiduesWithinChainOperationCOP

typedef utility::pointer::owning_ptr< SelectResiduesWithinChainOperation > protocols::toolbox::task_operations::SelectResiduesWithinChainOperationOP

typedef utility::pointer::owning_ptr< SeqprofConsensusOperation > protocols::toolbox::task_operations::SeqprofConsensusOperationOP

typedef utility::pointer::owning_ptr< SetIGTypeOperation const > protocols::toolbox::task_operations::SetIGTypeOperationCOP

typedef utility::pointer::owning_ptr< SetIGTypeOperation > protocols::toolbox::task_operations::SetIGTypeOperationOP

typedef utility::pointer::owning_ptr< ThreadSequenceOperation const > protocols::toolbox::task_operations::ThreadSequenceOperationCOP

typedef utility::pointer::owning_ptr< ThreadSequenceOperation > protocols::toolbox::task_operations::ThreadSequenceOperationOP

Function Documentation

bool protocols::toolbox::task_operations::is_part	(	utility::vector1< core::Size >	vec,
		core::Size	pos
	)