| blanket_assign_state_0() | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| BOTH_SC_AND_BB enum value | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| cast_flexbb_edge(EdgeBase const *edge) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| cast_flexbb_edge(EdgeBase *edge) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| cast_minimalist_flexbb_edge(EdgeBase const *edge) const | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | inlineprotected |
| cast_minimalist_flexbb_edge(EdgeBase *edge) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | inlineprotected |
| cast_otfflexbb_edge(EdgeBase const *edge) const | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | inlineprotected |
| cast_otfflexbb_edge(EdgeBase *edge) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | inlineprotected |
| commit_considered_backbone_move(ObjexxFCL::FArray1_int &rotamer_on_node) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | privatevirtual |
| commit_considered_substitution() | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| complete_deltaE_prediction_for_bbmove(core::PackerEnergy &delta_energy, core::PackerEnergy &prev_energy_for_flexseg, bool &valid_motion, int &num_nodes_changing_state) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | protected |
| consider_backbone_move(int bb_id, core::PackerEnergy &delta_energy, core::PackerEnergy &prev_flexseg_energy, bool &valid_motion, int &num_nodes_changing_state) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| consider_bbmove_w_state_substitution(int node_ind, int new_state, core::PackerEnergy &delta_energy, core::PackerEnergy &prev_energy_for_flexseg, bool &valid_motion, int &num_nodes_changing_state) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| consider_substitution(int node_ind, int new_state, PackerEnergy &delta_energy, PackerEnergy &prev_energy_for_node) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| count_dynamic_memory() const | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | protectedvirtual |
| count_static_memory() const | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | protectedvirtual |
| create_new_edge(int index1, int index2) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | protectedvirtual |
| create_new_node(int node_index, int num_states) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | protectedvirtual |
| debug_note_accepted_substitution() | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| debug_note_considered_substitution(core::conformation::Residue const &alt_rotamer, int index) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| debug_note_projected_deltaE_of_considered_substitution(PackerEnergy deltaE, PackerEnergy node_alt_total, bool require_match=true) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| debug_note_rejected_substitution() | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| EdgeBase typedef | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| find_flexbb_edge(int node1, int node2) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| find_flexbb_edge(int node1, int node2) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| find_minimalist_flexbb_edge(int node1, int node2) const | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | inlineprotected |
| find_minimalist_flexbb_edge(int node1, int node2) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | inlineprotected |
| find_otfflexbb_edge(int node1, int node2) const | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | inlineprotected |
| find_otfflexbb_edge(int node1, int node2) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | inlineprotected |
| FlexbbInteractionGraph(int num_nodes) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| flexseg_considering_alt_bb() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| flexseg_for_moltenres(int moltenres) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| flexseg_members(int flexseg) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inline |
| get_accessible_states(Subsitution move_mode, utility::vector1< Size > &rotlist) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| get_backbone_currently_assigned(int bbid) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| get_backbone_list(utility::vector1< Size > &bblist) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| get_bb_for_state(int node, int state) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| get_edge_memory_usage() const | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| get_energy_current_state_assignment() | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| get_energy_sum_for_vertex_group(int group_id) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| get_enforce_bb_contiguity() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| get_flexbb_node(int index) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| get_flexbb_node(int index) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| get_flexseg_bb_offset(int flexseg_id) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inline |
| get_flexseg_for_bb(int bb) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inline |
| get_minimalistflexbb_node(int index) const | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | inlineprotected |
| get_minimalistflexbb_node(int index) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | inlineprotected |
| get_num_aa_types() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inline |
| get_num_nodes_changing_state() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | protected |
| get_num_states_per_backbone_for_node(int node, int bb) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| get_one_body_energy_for_node_state(int node, int state) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| get_otfflexbb_node(int index) const | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | inlineprotected |
| get_otfflexbb_node(int index) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | inlineprotected |
| get_pose() const | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| get_scorefxn() const | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| increment_count_nodes_in_flexseg() | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| initialize(core::pack::rotamer_set::RotamerSetsBase const &rot_sets) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| last_considered_backbone_sub_unresolved() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| last_considered_backbone_sub_valid() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| last_considered_substitution_kept_backbone_fixed() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| last_considered_substitution_moved_the_backbone() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| last_considered_substitution_unresolved() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| MinimalistFlexbbInteractionGraph(int num_nodes) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | |
| node_considering_alt_state() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| nodes_from_same_flexseg(int node1, int node2) const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| note_bbjump_substitution() | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| note_fixedbb_substitution() | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| note_last_considered_substitution_resolved() | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | protected |
| note_long_range_interactions_exist_for_edge(int node1, int node2) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| OTFFlexbbInteractionGraph(int num_nodes) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| PackerEnergy typedef | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| parent typedef | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | |
| Pose typedef | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| PoseCOP typedef | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| PoseOP typedef | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| print_current_state_assignment() const | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| project_deltaE_for_substitution(int alternate_state, PackerEnergy &prev_energy_for_node) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | private |
| Real typedef | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| reset_node_in_moving_flexseg_count() | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | protected |
| resolve_uncommitted_substitution() | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | protected |
| SC_ONLY enum value | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| ScoreFunction typedef | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| ScoreFunctionCOP typedef | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| ScoreFunctionOP typedef | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| set_enforce_bb_contiguity(bool) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | protected |
| set_errorfull_deltaE_threshold(PackerEnergy deltaE) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| set_flexseg_considering_alt_bb(int setting) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| set_GlyCorrection_values_for_edge(int node1, int node2, int node_not_necessarily_glycine, int state, int other_bb, PackerEnergy bb_nonglybb_E, PackerEnergy bb_glybb_E, PackerEnergy sc_nonglybb_E, PackerEnergy sc_glybb_E) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| set_last_considered_backbone_sub_valid(bool setting) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| set_network_state(ObjexxFCL::FArray1_int &node_states) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| set_node_considering_alt_state(int setting) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| set_pose(Pose const &pose) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | virtual |
| set_ProCorrection_values_for_edge(int node1, int node2, int node_not_necessarily_proline, int state, int other_bb, PackerEnergy bb_nonprobb_E, PackerEnergy bb_probb_E, PackerEnergy sc_nonprobb_E, PackerEnergy sc_probb_E) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | |
| set_scorefxn(ScoreFunction const &sfxn) | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | virtual |
| set_state_for_node(int node_ind, int new_state) | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| set_total_energy_alternate_state_assignment(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| set_total_energy_current_state_assignment(PackerEnergy setting) | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | protected |
| Subsitution enum name | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | |
| total_energy_alternate_state_assignment() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| total_energy_current_state_assignment() const | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | inlineprotected |
| update_internal_energy_totals() | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | protectedvirtual |
| ~FlexbbInteractionGraph() | protocols::flexpack::interaction_graph::FlexbbInteractionGraph | virtual |
| ~MinimalistFlexbbInteractionGraph() | protocols::flexpack::interaction_graph::MinimalistFlexbbInteractionGraph | virtual |
| ~OTFFlexbbInteractionGraph() | protocols::flexpack::interaction_graph::OTFFlexbbInteractionGraph | virtual |
1.8.7