protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger Member List

This is the complete list of members for protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger, including all inherited members.

apply(core::pose::Pose &pose_to_visualize)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::moves::Mover	virtual
create()	protocols::moves::Mover	virtual
end_res_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
figure_out_loop(core::pose::Pose const &pose)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
fill_chainTORS_info(core::pose::Pose const &pose, utility::vector1< utility::vector1< core::Real > > &atoms, utility::vector1< core::Real > &dt_ang, utility::vector1< core::Real > &db_ang, utility::vector1< core::Real > &db_len, core::Size const &start_res_, core::Size const &end_res_) const	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
Filters_map typedef	protocols::moves::Mover
fix_phi_psi_offsets(core::pose::Pose &pose) const	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
fresh_instance() const	protocols::moves::Mover	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
grab_main_chain_torsion_set_list(core::pose::Pose const &pose)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
idl_C_N_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
idl_C_N_CA_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
idl_CA_C_N_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
initialize_is_fixed_res(utility::vector1< core::Size > const &fixed_res, std::string const &working_sequence)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
is_fixed_res_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
is_pre_proline_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
KIC_loop_close(core::pose::Pose &pose)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
KIC_loop_close_with_perturbations(core::pose::Pose &pose)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loop_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
main_chain_torsion_set_lists() const	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger
main_chain_torsion_sets_for_moving_residues_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
middle_offset_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
middle_res_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
num_perturb_steps_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
OMEGA_MEAN_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
operator=(Mover const &other)	protocols::moves::Mover
output_chainTORS(utility::vector1< core::Real > const &dt_ang, utility::vector1< core::Real > const &db_ang, utility::vector1< core::Real > const &db_len) const	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
perturb_torsion_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
phi_offsets_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
Pose typedef	protocols::moves::Mover
pose_count_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
PoseCOP typedef	protocols::moves::Mover
psi_offsets_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
ramachandran_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
sample_omega_recursively(core::pose::Pose &pose, int const offset, utility::vector1< utility::vector1< core::Real > > &atoms, utility::vector1< core::Real > &dt_ang, utility::vector1< core::Real > &db_ang, utility::vector1< core::Real > &db_len, utility::vector1< core::Size > const &pivots, utility::vector1< core::Size > const &order)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
sampler_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
save_phi_psi_offsets(core::pose::Pose const &pose)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
save_state(SerializableState &state)	protocols::moves::Mover	virtual
seg_len_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
setup_torsions(core::pose::Pose const &pose)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
start_res_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
StepWiseProteinLoopBridger(rotamer_sampler::RotamerSizedOP sampler, protocols::stepwise::sampling::protein::StepWiseProteinJobParametersCOP job_parameters)	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
use_icoor_geometry_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
verbose_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
which_torsions() const	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger
which_torsions_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
working_bridge_res_	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger	private
~Mover()	protocols::moves::Mover	virtual
~StepWiseProteinLoopBridger()	protocols::stepwise::sampling::protein::StepWiseProteinLoopBridger