| apply(core::pose::Pose &) | protocols::simple_moves::ClassicFragmentMover | virtual |
| protocols::simple_moves::FragmentMover::apply(core::pose::Pose &, Size pos) const | protocols::simple_moves::FragmentMover | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| apply_at_all_positions(core::pose::Pose &) const | protocols::simple_moves::FragmentMover | virtual |
| apply_fragment(core::fragment::Frame const &frame, Size frag_num, core::kinematics::MoveMap const &movemap, core::pose::Pose &pose) const | protocols::simple_moves::ClassicFragmentMover | virtual |
| apply_frames(core::pose::Pose &, core::fragment::FrameList const &) const | protocols::simple_moves::ClassicFragmentMover | protectedvirtual |
| bApplyEndBias_ | protocols::simple_moves::ClassicFragmentMover | private |
| check_ss() const | protocols::simple_moves::ClassicFragmentMover | inline |
| check_ss_ | protocols::simple_moves::ClassicFragmentMover | private |
| choose_fragment(core::fragment::FrameList const &, core::pose::Pose const &, Size &frame_num, Size &frag_num) const | protocols::simple_moves::ClassicFragmentMover | virtual |
| choose_window_length(core::pose::Pose const &, Size &window_length) const | protocols::simple_moves::ClassicFragmentMover | inlinevirtual |
| choose_window_start(core::pose::Pose const &, Size window_length, Size &window_start) const | protocols::simple_moves::ClassicFragmentMover | virtual |
| ClassicFragmentMover() | protocols::simple_moves::ClassicFragmentMover | |
| ClassicFragmentMover(core::fragment::FragSetCOP fragset) | protocols::simple_moves::ClassicFragmentMover | |
| ClassicFragmentMover(core::fragment::FragSetCOP fragset, core::kinematics::MoveMapCOP movemap) | protocols::simple_moves::ClassicFragmentMover | |
| ClassicFragmentMover(core::fragment::ConstantLengthFragSet const &fragset, core::kinematics::MoveMap const &movemap) | protocols::simple_moves::ClassicFragmentMover | |
| ClassicFragmentMover(core::fragment::FragSetCOP fragset, core::kinematics::MoveMapCOP movemap, std::string type) | protocols::simple_moves::ClassicFragmentMover | protected |
| ClassicFragmentMover(core::fragment::FragSetCOP fragset, std::string type) | protocols::simple_moves::ClassicFragmentMover | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::simple_moves::ClassicFragmentMover | virtual |
| create() | protocols::moves::Mover | virtual |
| define_start_window(Size window_start) | protocols::simple_moves::ClassicFragmentMover | |
| enable_end_bias_check(bool setting=true) | protocols::simple_moves::ClassicFragmentMover | inline |
| end_bias() const | protocols::simple_moves::ClassicFragmentMover | inline |
| end_bias_ | protocols::simple_moves::ClassicFragmentMover | private |
| end_bias_check(core::pose::Pose const &, Size window_start) const | protocols::simple_moves::ClassicFragmentMover | virtual |
| end_bias_check_enabled() const | protocols::simple_moves::ClassicFragmentMover | inline |
| Filters_map typedef | protocols::moves::Mover | |
| FragmentMover(std::string type) | protocols::simple_moves::FragmentMover | protected |
| FragmentMover(core::fragment::FragSetCOP fragset, std::string type) | protocols::simple_moves::FragmentMover | protected |
| FragmentMover(core::fragment::FragSetCOP fragset, core::kinematics::MoveMapCOP movemap, std::string type) | protocols::simple_moves::FragmentMover | protected |
| fragments() const | protocols::simple_moves::FragmentMover | |
| fragset_ | protocols::simple_moves::FragmentMover | protected |
| fresh_instance() const | protocols::simple_moves::ClassicFragmentMover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::simple_moves::ClassicFragmentMover | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| insert_map() const | protocols::simple_moves::FragmentMover | inline |
| insert_map_ | protocols::simple_moves::FragmentMover | protected |
| insert_size() const | protocols::simple_moves::FragmentMover | inline |
| insert_size_ | protocols::simple_moves::FragmentMover | protected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| min_frag_length_ | protocols::simple_moves::ClassicFragmentMover | private |
| min_overlap_ | protocols::simple_moves::ClassicFragmentMover | private |
| movemap() const | protocols::simple_moves::FragmentMover | |
| movemap_ | protocols::simple_moves::FragmentMover | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| on_new_fragments() | protocols::simple_moves::ClassicFragmentMover | inlinevirtual |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| predefined_window_start_ | protocols::simple_moves::ClassicFragmentMover | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_check_ss(bool setting) | protocols::simple_moves::ClassicFragmentMover | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_defaults() | protocols::simple_moves::ClassicFragmentMover | virtual |
| set_end_bias(core::Real setting) | protocols::simple_moves::ClassicFragmentMover | inline |
| set_fragments(core::fragment::FragSetCOP new_frags_) | protocols::simple_moves::FragmentMover | virtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_min_frag_length(Size setting) | protocols::simple_moves::ClassicFragmentMover | inline |
| set_min_overlap(Size setting) | protocols::simple_moves::ClassicFragmentMover | inline |
| set_movemap(core::kinematics::MoveMapCOP movemap) | protocols::simple_moves::FragmentMover | virtual |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| show(std::ostream &output=std::cout) const | protocols::simple_moves::ClassicFragmentMover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| update_insert_map() | protocols::simple_moves::FragmentMover | protected |
| use_predefined_window_start_ | protocols::simple_moves::ClassicFragmentMover | private |
| valid_ss(std::string const &new_ss) const | protocols::simple_moves::ClassicFragmentMover | virtual |
| ~ClassicFragmentMover() | protocols::simple_moves::ClassicFragmentMover | |
| ~FragmentMover() | protocols::simple_moves::FragmentMover | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7