| apply(Pose &pose) | protocols::contact_map::ContactMap | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::contact_map::ContactMap | virtual |
| column_names_ | protocols::contact_map::ContactMap | private |
| ContactMap() | protocols::contact_map::ContactMap | |
| ContactMap(ContactMap const &) | protocols::contact_map::ContactMap | |
| contacts_ | protocols::contact_map::ContactMap | private |
| create() | protocols::moves::Mover | virtual |
| distance_cutoff_ | protocols::contact_map::ContactMap | private |
| distance_matrix_ | protocols::contact_map::ContactMap | private |
| fill_contacts(core::Size region_begin, core::Size region_end, Pose const &pose) | protocols::contact_map::ContactMap | private |
| fill_contacts(core::Size region_begin, core::Size region_end, core::Size seqpos_ligand, Pose const &pose) | protocols::contact_map::ContactMap | private |
| fill_contacts(core::Size region1_begin, core::Size region1_end, core::Size region2_begin, core::Size region2_end, Pose const &pose) | protocols::contact_map::ContactMap | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::contact_map::ContactMap | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::contact_map::ContactMap | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| models_per_file_ | protocols::contact_map::ContactMap | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| n_poses_ | protocols::contact_map::ContactMap | private |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| output_matrix_ | protocols::contact_map::ContactMap | private |
| output_prefix_ | protocols::contact_map::ContactMap | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP, basic::datacache::DataMap &, protocols::filters::Filters_map const &, moves::Movers_map const &, Pose const &) | protocols::contact_map::ContactMap | virtual |
| parse_region_string(std::string, core::Size &, core::Size &, Pose const &) | protocols::contact_map::ContactMap | |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset() | protocols::contact_map::ContactMap | |
| reset_count_ | protocols::contact_map::ContactMap | private |
| reset_status() | protocols::moves::Mover | |
| row_format_ | protocols::contact_map::ContactMap | private |
| row_names_ | protocols::contact_map::ContactMap | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_distance_cutoff(core::Real cutoff) | protocols::contact_map::ContactMap | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_output_prefix(std::string prefix) | protocols::contact_map::ContactMap | inline |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::contact_map::ContactMap | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| write_to_file(std::string filename="") | protocols::contact_map::ContactMap | |
| ~ContactMap() | protocols::contact_map::ContactMap | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7