| align_pose_and_add_rmsd_constraints(pose::Pose &pose) const | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| apply(pose::Pose &pose) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| bridge_res_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| clone_modeler() const | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| create() | protocols::moves::Mover | virtual |
| do_ccd_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| do_minimizing(core::pose::Pose &pose, utility::vector1< pose::PoseOP > &pose_list) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| do_residue_sampling(core::pose::Pose &pose, utility::vector1< pose::PoseOP > &pose_list) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| figure_out_moving_res_list(pose::Pose const &pose) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| figure_out_protein_moving_res_list_from_most_distal_res(pose::Pose const &pose, Size const moving_res) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| Filters_map typedef | protocols::moves::Mover | |
| frag_files_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| fresh_instance() const | protocols::moves::Mover | virtual |
| full_optimize_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::stepwise::sampling::protein::StepWiseProteinModeler | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_job_parameters_and_root(pose::Pose &pose) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| input_streams_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| job_parameters_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| moving_res_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| moving_res_list_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(StepWiseProteinModeler const &src) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| protocols::moves::Mover::operator=(Mover const &other) | protocols::moves::Mover | |
| options() | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| options_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| pack_scorefxn_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize() | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| sampling_successful(utility::vector1< pose::PoseOP > &pose_list) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| set_bridge_res(utility::vector1< Size > const &setting) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | inline |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_frag_files(utility::vector1< std::string > const &frag_files) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_input_streams(utility::vector1< InputStreamWithResidueInfoOP > const &input_streams) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| set_job_parameters(StepWiseProteinJobParametersCOP job_parameters) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_moving_res_and_reset(Size const moving_res) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| set_moving_res_list(utility::vector1< Size > const &setting) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_options(StepWiseProteinModelerOptionsCOP options) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| set_skip_sampling(bool const &setting) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| set_working_minimize_res(utility::vector1< Size > const &setting) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | inline |
| setup_job_parameters_for_stepwise_with_full_model_info(core::pose::Pose &pose) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| StepWiseProteinModeler(scoring::ScoreFunctionOP scorefxn) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| StepWiseProteinModeler(core::scoring::ScoreFunctionOP scorefxn, utility::vector1< Size > const &moving_res_list) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| StepWiseProteinModeler(StepWiseProteinModeler const &src) | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| working_minimize_res_ | protocols::stepwise::sampling::protein::StepWiseProteinModeler | private |
| ~Mover() | protocols::moves::Mover | virtual |
| ~StepWiseProteinModeler() | protocols::stepwise::sampling::protein::StepWiseProteinModeler | |
1.8.7