protocols::ss_prediction::SS_predictor Class Reference

#include <SS_predictor.hh>

Public Member Functions
	SS_predictor (string type)
	Reads in models for SS prediction etc. More...
	~SS_predictor ()
vector1< vector1< Real > >	predict_ss (string fasta)

Private Member Functions
void	load_models (string rd1_model_fl, string rd2_model_fl)
string	get_window_aa (string fasta, SSize position)
vector1< Real >	predict_pos_rd1 (string window_aa)
vector1< Real >	predict_pos_rd2 (vector1< vector1< Real > > rd1_preds, SSize position, string fasta)
vector1< vector1< Real > >	predict_rd1 (string fasta)
vector1< vector1< Real > >	predict_rd2 (vector1< vector1< Real > > rd1_preds, string fasta)

Private Attributes
Svm_rosettaOP	rd1_model
Svm_rosettaOP	rd2_model
string	ss_type

Static Private Attributes
static const Size	WINDOW_SIZE = 15

Constructor & Destructor Documentation

protocols::ss_prediction::SS_predictor::SS_predictor

(

string

type

)

Reads in models for SS prediction etc.

References basic::database::full_name(), utility::io::izstream::good(), ss_type, and utility_exit_with_message.

protocols::ss_prediction::SS_predictor::~SS_predictor

(

)

Member Function Documentation

string protocols::ss_prediction::SS_predictor::get_window_aa ( string  fasta, SSize  position  )

private

void protocols::ss_prediction::SS_predictor::load_models ( string  rd1_model_fl, string  rd2_model_fl  )

private

vector1< Real > protocols::ss_prediction::SS_predictor::predict_pos_rd1 ( string  window_aa )

private

vector1< Real > protocols::ss_prediction::SS_predictor::predict_pos_rd2 ( vector1< vector1< Real > >  rd1_preds, SSize  position, string  fasta  )

private

References size(), and ss_type.

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_rd1 ( string  fasta )

private

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_rd2 ( vector1< vector1< Real > >  rd1_preds, string  fasta  )

private

References ss_type.

vector1< vector1< Real > > protocols::ss_prediction::SS_predictor::predict_ss

(

string

fasta

)

Member Data Documentation

Svm_rosettaOP protocols::ss_prediction::SS_predictor::rd1_model

private

Svm_rosettaOP protocols::ss_prediction::SS_predictor::rd2_model

private

string protocols::ss_prediction::SS_predictor::ss_type

private

const Size protocols::ss_prediction::SS_predictor::WINDOW_SIZE = 15

staticprivate

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/ss_prediction/SS_predictor.hh
• symlinks/rosetta/src/protocols/ss_prediction/SS_predictor.cc