protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions Member List

This is the complete list of members for protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions, including all inherited members.

allow_virtual_side_chains() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
allow_virtual_side_chains_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
atr_rep_screen() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
atr_rep_screen_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
cart_min() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
cart_min_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
ccd_close() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
ccd_close_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
centroid_output() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
centroid_output_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
centroid_score_diff_cut() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
centroid_score_diff_cut_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
centroid_screen() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
centroid_screen_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
centroid_weights() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
centroid_weights_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
choose_random() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
choose_random_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
clone() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions
cluster_by_all_atom_rmsd() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
cluster_by_all_atom_rmsd_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
cluster_radius() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
cluster_radius_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
disable_sampling_of_loop_takeoff() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
disable_sampling_of_loop_takeoff_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
disallow_backbone_sampling() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
disallow_backbone_sampling_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
dump() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
dump_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
expand_loop_takeoff() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
expand_loop_takeoff_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
filter_native_big_bins() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
filter_native_big_bins_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
ghost_loops() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
ghost_loops_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
global_optimize() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
global_optimize_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
initialize_from_command_line()	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions
initialize_variables()	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
mapfile_activated() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
mapfile_activated_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
max_decoys() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
max_decoys_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
min_tolerance() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
min_tolerance_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
min_type() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
min_type_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
move_jumps_between_chains() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
move_jumps_between_chains_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
n_sample() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
n_sample_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
nstruct_centroid() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
nstruct_centroid_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
num_pose_minimize() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
num_pose_minimize_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
num_random_samples() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
num_random_samples_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
operator=(StepWiseProteinModelerOptions const &src)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions
output_minimized_pose_list() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
output_minimized_pose_list_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
pack_weights() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
pack_weights_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
parse_my_tag(utility::tag::TagCOP)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inlinevirtual
prepack() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
prepack_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
rescore_only() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
rescore_only_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
rmsd_screen() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
rmsd_screen_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
sample_beta() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
sample_beta_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
set_allow_virtual_side_chains(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_atr_rep_screen(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_cart_min(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_ccd_close(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_centroid_output(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_centroid_score_diff_cut(Real const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_centroid_screen(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_centroid_weights(std::string const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_choose_random(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_cluster_by_all_atom_rmsd(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_cluster_radius(Real const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_disable_sampling_of_loop_takeoff(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_disallow_backbone_sampling(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_dump(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_expand_loop_takeoff(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_filter_native_big_bins(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_ghost_loops(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_global_optimize(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_mapfile_activated(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_max_decoys(Size const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_min_tolerance(Real const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_min_type(std::string const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_move_jumps_between_chains(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_n_sample(Size const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_nstruct_centroid(Size const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_num_pose_minimize(Size const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_num_random_samples(Size const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_output_minimized_pose_list(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_pack_weights(std::string const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_prepack(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_rescore_only(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_rmsd_screen(Real const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_sample_beta(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_silent_file(std::string const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_skip_coord_constraints(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_skip_minimize(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_use_green_packer(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
set_use_packer_instead_of_rotamer_trials(bool const &setting)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
show(std::ostream &) const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inlinevirtual
silent_file() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
silent_file_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
skip_coord_constraints() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
skip_coord_constraints_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
skip_minimize() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
skip_minimize_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
StepWiseProteinModelerOptions()	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions
StepWiseProteinModelerOptions(StepWiseProteinModelerOptions const &src)	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions
type() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inlinevirtual
use_green_packer() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
use_green_packer_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
use_packer_instead_of_rotamer_trials() const	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	inline
use_packer_instead_of_rotamer_trials_	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions	private
~StepWiseProteinModelerOptions()	protocols::stepwise::sampling::protein::StepWiseProteinModelerOptions