protocols::abinitio::PairingStatistics Class Reference

#include <PairingStatistics.hh>

Public Types
typedef StatEntries::const_iterator	const_iterator
typedef PairingStatEntry::Model	Model
typedef std::map< Model, core::scoring::dssp::StrandPairingSet >	Topologies
typedef std::map< Model, core::Size >	ModelFreq
typedef utility::vector1 < std::pair< core::Real, Model > >	ModelWeight
typedef std::map< Model, core::Real >	Weights

Public Member Functions
	PairingStatistics ()
virtual	~PairingStatistics ()
	PairingStatistics (Templates const &templates)
	PairingStatistics (core::scoring::dssp::StrandPairingSet const &topology)
void	set_native_topology (core::scoring::dssp::StrandPairingSet const &topology)
core::scoring::dssp::StrandPairingSet const &	get_native_topology () const
const_iterator	begin () const
const_iterator	end () const
Model	ranked_model (Size nr) const
core::Size	nr_models () const
core::Real	weight (Size nr) const
core::Real	weight (Model id) const
core::scoring::dssp::StrandPairingSet const &	topology (Model id) const
core::Real	strand_weight (core::scoring::dssp::StrandPairing const &pairing) const
core::scoring::dssp::StrandPairingSet const &	suggest_topology (std::string &topol_id) const
bool	is_native_pairing (core::scoring::dssp::StrandPairing const &pairing) const
void	add_entry (core::scoring::dssp::StrandPairing const &ps, Model const &id)
void	add_topology (core::scoring::dssp::StrandPairingSet const &topology, Model const &id)
void	compute_model_weights (ModelFreq &)

Static Public Member Functions
static void	register_options ()

Private Member Functions
void	compute (Templates const &templates)

Private Attributes
StatEntries	entries_
Topologies	topols_
ModelWeight	model_weight_
core::scoring::dssp::StrandPairingSet	native_topology_

Friends
std::ostream &	operator<< (std::ostream &, PairingStatistics const &ps)
std::istream &	operator>> (std::istream &is, PairingStatistics &ps)

Member Typedef Documentation

typedef StatEntries::const_iterator protocols::abinitio::PairingStatistics::const_iterator

typedef PairingStatEntry::Model protocols::abinitio::PairingStatistics::Model

typedef std::map< Model, core::Size > protocols::abinitio::PairingStatistics::ModelFreq

typedef utility::vector1< std::pair< core::Real, Model > > protocols::abinitio::PairingStatistics::ModelWeight

typedef std::map< Model, core::scoring::dssp::StrandPairingSet > protocols::abinitio::PairingStatistics::Topologies

typedef std::map< Model, core::Real > protocols::abinitio::PairingStatistics::Weights

Constructor & Destructor Documentation

protocols::abinitio::PairingStatistics::PairingStatistics ( )

inline

protocols::abinitio::PairingStatistics::~PairingStatistics ( )

virtual

protocols::abinitio::PairingStatistics::PairingStatistics ( Templates const &  templates )

inline

References compute().

protocols::abinitio::PairingStatistics::PairingStatistics

(

core::scoring::dssp::StrandPairingSet const &

topology

)

References add_topology(), and compute_model_weights().

Member Function Documentation

void protocols::abinitio::PairingStatistics::add_entry	(	core::scoring::dssp::StrandPairing const &	ps,
		Model const &	id
	)

References entries_, and key.

Referenced by add_topology().

void protocols::abinitio::PairingStatistics::add_topology	(	core::scoring::dssp::StrandPairingSet const &	topology,
		Model const &	id
	)

References add_entry(), core::scoring::dssp::StrandPairingSet::begin(), core::scoring::dssp::StrandPairingSet::end(), topology(), topols_, and tr.

Referenced by compute(), and PairingStatistics().

const_iterator protocols::abinitio::PairingStatistics::begin ( ) const

inline

References entries_.

Referenced by protocols::abinitio::StrandConstraints::StrandConstraints().

void protocols::abinitio::PairingStatistics::compute ( Templates const &  templates )

private

References add_topology(), protocols::abinitio::Templates::begin(), compute_model_weights(), protocols::abinitio::Templates::end(), core::scoring::dssp::StrandPairingSet::get_beta_pairs(), protocols::abinitio::Template::map_pairings2target(), protocols::abinitio::Template::name(), and protocols::abinitio::Template::strand_pairings().

Referenced by PairingStatistics().

void protocols::abinitio::PairingStatistics::compute_model_weights

(

ModelFreq &

model_freq

)

References basic::options::OptionKeys::jumps::contact_score, entries_, model_weight_, norm(), basic::options::option, score, topols_, and weight().

Referenced by compute(), and PairingStatistics().

const_iterator protocols::abinitio::PairingStatistics::end ( ) const

inline

References entries_.

Referenced by protocols::abinitio::StrandConstraints::StrandConstraints().

core::scoring::dssp::StrandPairingSet const& protocols::abinitio::PairingStatistics::get_native_topology ( ) const

inline

References native_topology_.

bool protocols::abinitio::PairingStatistics::is_native_pairing ( core::scoring::dssp::StrandPairing const &  pairing ) const

inline

References core::scoring::dssp::StrandPairingSet::has_pairing(), and native_topology_.

Referenced by protocols::abinitio::operator<<().

core::Size protocols::abinitio::PairingStatistics::nr_models ( ) const

inline

References model_weight_.

Referenced by suggest_topology().

Model protocols::abinitio::PairingStatistics::ranked_model ( Size  nr ) const

inline

References model_weight_.

Referenced by suggest_topology().

void protocols::abinitio::PairingStatistics::register_options ( )

static

References utility::options::OptionCollection::add_relevant(), templates::force_native_topology, option, and templates::topology_rank_cutoff.

void protocols::abinitio::PairingStatistics::set_native_topology ( core::scoring::dssp::StrandPairingSet const &  topology )

inline

References native_topology_, and topology().

core::Real protocols::abinitio::PairingStatistics::strand_weight

(

core::scoring::dssp::StrandPairing const &

pairing

)

const

References entries_.

Referenced by protocols::abinitio::operator<<().

core::scoring::dssp::StrandPairingSet const & protocols::abinitio::PairingStatistics::suggest_topology

(

std::string &

topol_id

)

const

References templates::force_native_topology, model_weight_, native_topology_, nr_models(), option, ranked_model(), protocols::abinitio::RG, runtime_assert, topology(), templates::topology_rank_cutoff, tr, numeric::random::RandomGenerator::uniform(), utility_exit_with_message, and weight().

core::scoring::dssp::StrandPairingSet const& protocols::abinitio::PairingStatistics::topology ( Model  id ) const

inline

References topols_, and utility_exit_with_message.

Referenced by add_topology(), protocols::abinitio::operator<<(), set_native_topology(), and suggest_topology().

core::Real protocols::abinitio::PairingStatistics::weight ( Size  nr ) const

inline

References model_weight_, and runtime_assert.

Referenced by compute_model_weights(), and suggest_topology().

core::Real protocols::abinitio::PairingStatistics::weight

(

Model

id

)

const

References model_weight_, and utility_exit_with_message.

Friends And Related Function Documentation

std::ostream& operator<< ( std::ostream &  , PairingStatistics const &  ps  )

friend

std::istream& operator>> ( std::istream &  is, PairingStatistics &  ps  )

friend

Member Data Documentation

StatEntries protocols::abinitio::PairingStatistics::entries_

private

Referenced by add_entry(), begin(), compute_model_weights(), end(), protocols::abinitio::operator>>(), and strand_weight().

ModelWeight protocols::abinitio::PairingStatistics::model_weight_

private

Referenced by compute_model_weights(), nr_models(), protocols::abinitio::operator<<(), protocols::abinitio::operator>>(), ranked_model(), suggest_topology(), and weight().

core::scoring::dssp::StrandPairingSet protocols::abinitio::PairingStatistics::native_topology_

private

Referenced by get_native_topology(), is_native_pairing(), set_native_topology(), and suggest_topology().

Topologies protocols::abinitio::PairingStatistics::topols_

private

Referenced by add_topology(), compute_model_weights(), protocols::abinitio::operator>>(), and topology().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/abinitio/PairingStatistics.hh
• symlinks/rosetta/src/protocols/abinitio/PairingStatistics.cc