This is the complete list of members for protocols::farna::RNA_ChunkLibrary, including all inherited members.

add_chunk_set(std::string const &silent_file, core::pose::ResMap const &res_map, core::pose::Pose const &big_pose)	protocols::farna::RNA_ChunkLibrary
align_to_chunk(core::pose::Pose &pose, ChunkSet const &chunk_set, core::Size const chunk_index) const	protocols::farna::RNA_ChunkLibrary	private
allow_insert()	protocols::farna::RNA_ChunkLibrary	inline
allow_insert_	protocols::farna::RNA_ChunkLibrary	private
base_pair_step_library_	protocols::farna::RNA_ChunkLibrary	private
check_fold_tree_OK(core::pose::Pose const &pose)	protocols::farna::RNA_ChunkLibrary
check_fold_tree_OK(core::pose::ResMap const &res_map, core::pose::Pose const &pose, core::pose::Pose const &scratch_pose)	protocols::farna::RNA_ChunkLibrary	private
check_res_map(core::pose::ResMap const &res_map, core::pose::Pose const &scratch_pose, std::string const &sequence) const	protocols::farna::RNA_ChunkLibrary	private
chunk_coverage() const	protocols::farna::RNA_ChunkLibrary	inline
chunk_coverage_	protocols::farna::RNA_ChunkLibrary	private
chunk_set(Size const n) const	protocols::farna::RNA_ChunkLibrary	inline
chunk_sets_	protocols::farna::RNA_ChunkLibrary	private
coarse_rna_	protocols::farna::RNA_ChunkLibrary	private
covered_by_chunk_	protocols::farna::RNA_ChunkLibrary	private
figure_out_chunk_coverage()	protocols::farna::RNA_ChunkLibrary	private
get_indices_of_moving_chunks() const	protocols::farna::RNA_ChunkLibrary
initialize_random_chunks(core::pose::Pose &pose, bool const dump_pdb=false) const	protocols::farna::RNA_ChunkLibrary
initialize_rna_chunk_library(utility::vector1< std::string > const &pdb_files, utility::vector1< std::string > const &silent_files, core::pose::Pose const &pose, utility::vector1< core::Size > const &input_res)	protocols::farna::RNA_ChunkLibrary
insert_chunk_into_pose(core::pose::Pose &pose, Size const &chunk_list_index, Size const &chunk_pose_index) const	protocols::farna::RNA_ChunkLibrary
num_chunk_sets() const	protocols::farna::RNA_ChunkLibrary	inline
num_chunks(Size const n) const	protocols::farna::RNA_ChunkLibrary	inline
num_moving_chunks() const	protocols::farna::RNA_ChunkLibrary
random_chunk_insertion(core::pose::Pose &pose) const	protocols::farna::RNA_ChunkLibrary
RNA_ChunkLibrary()	protocols::farna::RNA_ChunkLibrary
RNA_ChunkLibrary(utility::vector1< std::string > const &pdb_files, utility::vector1< std::string > const &silent_files, core::pose::Pose const &pose, utility::vector1< core::Size > const &input_res)	protocols::farna::RNA_ChunkLibrary
RNA_ChunkLibrary(utility::vector1< std::string > const &silent_files, core::pose::Pose const &pose, utility::vector1< core::Size > const &input_res)	protocols::farna::RNA_ChunkLibrary
set_allow_insert(toolbox::AllowInsertOP allow_insert)	protocols::farna::RNA_ChunkLibrary
setup_base_pair_step_chunks(core::pose::Pose const &pose, utility::vector1< BasePairStep > base_pair_steps)	protocols::farna::RNA_ChunkLibrary
superimpose_to_first_chunk(core::pose::Pose &pose) const	protocols::farna::RNA_ChunkLibrary
update_allow_insert(core::pose::ResMap const &res_map, core::pose::Pose const &pose, core::pose::Pose const &scratch_pose, Size const domain_num)	protocols::farna::RNA_ChunkLibrary	private
~RNA_ChunkLibrary()	protocols::farna::RNA_ChunkLibrary