protocols::frag_picker::scores::MidPsiOut Class Reference

scores a fragment by the root mean square deviation of Psi and Psi angles. More...

#include <MidPsiOut.hh>

Public Member Functions
	MidPsiOut (Size priority, Real lowest_acceptable_value, bool use_lowest)
	creates a Psi-Psi-based scoring function. More...
void	do_caching (VallChunkOP)
void	clean_up ()
bool	score (FragmentCandidateOP, FragmentScoreMapOP)
bool	cached_score (FragmentCandidateOP, FragmentScoreMapOP)
Public Member Functions inherited from protocols::frag_picker::scores::CachingScoringMethod
	CachingScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
Public Member Functions inherited from protocols::frag_picker::scores::FragmentScoringMethod
	FragmentScoringMethod (Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)
std::string &	get_score_name ()
	Returns a name of this scoring method. More...
Size	get_id ()
	Returns an integer index assigned to this scoring method by a scoring manager. More...
void	set_id (Size id)
	Sets a new integer index for this scoring method. More...
Size	get_priority ()
	Returns a priority of this scoring method. More...
Real	get_min_allowed_score ()
	Returns the lowest acceptable score value for this scoring method. More...
bool	get_use_lowest ()
	Returns the boolean choice on using the above lowest acceptable score value. More...
void	set_min_allowed_score (Real lowest_acceptable_value)
	Sets a new value of the lowest acceptable score. More...

Private Attributes
ObjexxFCL::FArray1D_double	chunk_psi_
std::string	cached_scores_id_

Additional Inherited Members
Protected Attributes inherited from protocols::frag_picker::scores::FragmentScoringMethod
Size	id_
Size	priority_
std::string	name_
Real	lowest_acceptable_value_
bool	use_lowest_

Detailed Description

scores a fragment by the root mean square deviation of Psi and Psi angles.

Constructor & Destructor Documentation

protocols::frag_picker::scores::MidPsiOut::MidPsiOut	(	Size	priority,
		Real	lowest_acceptable_value,
		bool	use_lowest
	)

creates a Psi-Psi-based scoring function.

Detailed: Psi-Psi angles from a fragment will be compared to relevant angles in a given pose, which should have the same number of residues a the query sequence

Member Function Documentation

bool protocols::frag_picker::scores::MidPsiOut::cached_score ( FragmentCandidateOP  fragment, FragmentScoreMapOP  scores  )

virtual

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References cached_scores_id_, chunk_psi_, do_caching(), protocols::frag_picker::scores::FragmentScoringMethod::id_, and protocols::stepwise::sampling::protein::psi().

Referenced by score().

void protocols::frag_picker::scores::MidPsiOut::clean_up ( )

virtual

Implements protocols::frag_picker::scores::CachingScoringMethod.

void protocols::frag_picker::scores::MidPsiOut::do_caching ( VallChunkOP  current_chunk )

virtual

Implements protocols::frag_picker::scores::CachingScoringMethod.

References protocols::frag_picker::VallChunk::at(), chunk_psi_, and protocols::frag_picker::VallChunk::size().

Referenced by cached_score().

bool protocols::frag_picker::scores::MidPsiOut::score ( FragmentCandidateOP  fragment, FragmentScoreMapOP  scores  )

virtual

Reimplemented from protocols::frag_picker::scores::CachingScoringMethod.

References cached_score().

Member Data Documentation

std::string protocols::frag_picker::scores::MidPsiOut::cached_scores_id_

private

Referenced by cached_score().

ObjexxFCL::FArray1D_double protocols::frag_picker::scores::MidPsiOut::chunk_psi_

private

Referenced by cached_score(), and do_caching().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/frag_picker/scores/MidPsiOut.hh
• symlinks/rosetta/src/protocols/frag_picker/scores/MidPsiOut.cc