| AnchoredGraftMover(Size const start, Size const end) | protocols::grafting::AnchoredGraftMover | |
| apply(Pose &pose) | protocols::grafting::AnchoredGraftMover | virtual |
| protocols::grafting::GraftMoverBase::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| cen_scorefxn_ | protocols::grafting::GraftMoverBase | protected |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| combine_movemaps(MoveMap const &scaffold_mm, MoveMap const &insert_mm) | protocols::grafting::GraftMoverBase | protected |
| create() | protocols::moves::Mover | virtual |
| Cter_insert_flexibility_ | protocols::grafting::GraftMoverBase | protected |
| Cter_loop_end_ | protocols::grafting::GraftMoverBase | protected |
| Cter_loop_start_ | protocols::grafting::GraftMoverBase | protected |
| Cter_overhang_ | protocols::grafting::GraftMoverBase | protected |
| Cter_scaffold_flexibility_ | protocols::grafting::GraftMoverBase | protected |
| cycles_ | protocols::grafting::AnchoredGraftMover | private |
| delete_overhang_residues() | protocols::grafting::GraftMoverBase | protected |
| double_loop_double_arm_ | protocols::grafting::AnchoredGraftMover | private |
| double_loop_quad_arm_ | protocols::grafting::AnchoredGraftMover | private |
| end_ | protocols::grafting::GraftMoverBase | protected |
| fa_scorefxn_ | protocols::grafting::GraftMoverBase | protected |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_Cter_loop_end() | protocols::grafting::AnchoredGraftMover | |
| get_cterm_scaffold_flexibility() | protocols::grafting::AnchoredGraftMover | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::grafting::GraftMoverBase | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_nterm_scaffold_flexibility() | protocols::grafting::AnchoredGraftMover | |
| get_type() const | protocols::moves::Mover | inline |
| GraftMoverBase(Size const start, Size const end, std::string mover_name) | protocols::grafting::GraftMoverBase | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| insert_movemap_ | protocols::grafting::GraftMoverBase | protected |
| insert_piece(Pose const &pose) | protocols::grafting::GraftMoverBase | protected |
| insertion_length_ | protocols::grafting::GraftMoverBase | protected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| mintype_ | protocols::grafting::AnchoredGraftMover | private |
| movemap_ | protocols::grafting::GraftMoverBase | protected |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| Nter_insert_flexibility_ | protocols::grafting::GraftMoverBase | protected |
| Nter_loop_end_ | protocols::grafting::GraftMoverBase | protected |
| Nter_loop_start_ | protocols::grafting::GraftMoverBase | protected |
| Nter_overhang_ | protocols::grafting::GraftMoverBase | protected |
| Nter_scaffold_flexibility_ | protocols::grafting::GraftMoverBase | protected |
| operator=(Mover const &other) | protocols::moves::Mover | |
| original_end_ | protocols::grafting::GraftMoverBase | protected |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| perturb_backbone_for_test(Pose &pose, MoveMapOP mm) | protocols::grafting::GraftMoverBase | protectedvirtual |
| piece_ | protocols::grafting::GraftMoverBase | protected |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| repack_connection_and_residues_in_movemap(Pose &pose, core::scoring::ScoreFunctionOP fa_scorefxn) | protocols::grafting::AnchoredGraftMover | virtual |
| repack_connection_and_residues_in_movemap_and_piece(Pose &pose, core::scoring::ScoreFunctionOP fa_scorefxn) | protocols::grafting::AnchoredGraftMover | virtual |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scaffold_movemap_ | protocols::grafting::GraftMoverBase | protected |
| set_cen_scorefunction(core::scoring::ScoreFunctionOP scorefxn_) | protocols::grafting::AnchoredGraftMover | virtual |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_cycles(Size cycles) | protocols::grafting::AnchoredGraftMover | |
| set_default_cen_scorefunction() | protocols::grafting::AnchoredGraftMover | virtual |
| set_default_fa_scorefunction() | protocols::grafting::GraftMoverBase | virtual |
| set_default_movemap() | protocols::grafting::GraftMoverBase | protectedvirtual |
| set_defaults() | protocols::grafting::AnchoredGraftMover | |
| set_fa_scorefunction(core::scoring::ScoreFunctionOP score) | protocols::grafting::GraftMoverBase | virtual |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_insert_flexibility(Size const Nter_insert_flexibility, Size const Cter_insert_flexibility) | protocols::grafting::AnchoredGraftMover | |
| set_insert_region(Size const start, Size const end) | protocols::grafting::GraftMoverBase | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_mintype(std::string mintype) | protocols::grafting::AnchoredGraftMover | |
| set_movemaps(MoveMapOP const scaffold_mm, MoveMapOP const insert_mm) | protocols::grafting::AnchoredGraftMover | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_overhang(Size Nter_overhang, Size Cter_overhang) | protocols::grafting::GraftMoverBase | protected |
| set_piece(Pose &piece, Size Nter_overhang, Size Cter_overhang) | protocols::grafting::GraftMoverBase | virtual |
| set_regions_from_flexibility() | protocols::grafting::GraftMoverBase | protectedvirtual |
| set_regions_from_movemap(Pose &pose) | protocols::grafting::GraftMoverBase | protectedvirtual |
| set_scaffold_flexibility(Size const Nter_scaffold_flexibility, Size const Cter_scaffold_flexibility) | protocols::grafting::AnchoredGraftMover | |
| set_skip_sampling(bool skip_sampling) | protocols::grafting::AnchoredGraftMover | |
| set_test_control_mode(bool test_control_mode) | protocols::grafting::AnchoredGraftMover | |
| set_use_default_movemap_from_flexibility(bool def) | protocols::grafting::AnchoredGraftMover | |
| set_use_double_loop_double_CCD_arms(bool double_loop_double_arm) | protocols::grafting::AnchoredGraftMover | |
| set_use_double_loop_quad_CCD_arms(bool double_loop_quad_arm) | protocols::grafting::AnchoredGraftMover | |
| set_use_single_loop_double_CCD_arms(bool single_loop_double_arm) | protocols::grafting::AnchoredGraftMover | |
| set_use_smooth_centroid_settings(bool use_smooth) | protocols::grafting::AnchoredGraftMover | |
| setup_movemap_and_regions(Pose &pose) | protocols::grafting::GraftMoverBase | protectedvirtual |
| setup_single_loop_double_arm_remodeling_foldtree(Pose &pose, Size const Nter_loop_start, Size const Cter_loop_end, bool loop_modeling=false) | protocols::grafting::GraftMoverBase | protectedvirtual |
| setup_single_loop_single_arm_remodeling_foldtree(Pose &pose, Size const Nter_loop_start, Size const Cter_loop_end, bool loop_modeling=false) | protocols::grafting::GraftMoverBase | protectedvirtual |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| single_loop_double_arm_ | protocols::grafting::AnchoredGraftMover | private |
| skip_sampling_ | protocols::grafting::AnchoredGraftMover | private |
| start_ | protocols::grafting::GraftMoverBase | protected |
| Strings typedef | protocols::moves::Mover | |
| superimpose_overhangs_heavy(Pose const &pose, bool ca_only, bool silence_rms) | protocols::grafting::GraftMoverBase | |
| TagCOP typedef | protocols::moves::Mover | |
| test_control_mode_ | protocols::grafting::AnchoredGraftMover | private |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| use_default_movemap_ | protocols::grafting::GraftMoverBase | protected |
| ~AnchoredGraftMover() | protocols::grafting::AnchoredGraftMover | virtual |
| ~GraftMoverBase() | protocols::grafting::GraftMoverBase | virtual |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7