protocols::ncbb::NcbbDockDesignProtocol Member List

This is the complete list of members for protocols::ncbb::NcbbDockDesignProtocol, including all inherited members.

apply(core::pose::Pose &pose)	protocols::ncbb::NcbbDockDesignProtocol	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::ncbb::NcbbDockDesignProtocol	virtual
create()	protocols::moves::Mover	virtual
dock_design_loop_num_	protocols::ncbb::NcbbDockDesignProtocol	private
Filters_map typedef	protocols::moves::Mover
final_design_min_	protocols::ncbb::NcbbDockDesignProtocol	private
fresh_instance() const	protocols::ncbb::NcbbDockDesignProtocol	inlinevirtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::ncbb::NcbbDockDesignProtocol	inlinevirtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
keep_history_	protocols::ncbb::NcbbDockDesignProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
mc_initial_pose_	protocols::ncbb::NcbbDockDesignProtocol	private
mc_temp_	protocols::ncbb::NcbbDockDesignProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
ncbb_design_first_	protocols::ncbb::NcbbDockDesignProtocol	private
NcbbDockDesignProtocol()	protocols::ncbb::NcbbDockDesignProtocol
NcbbDockDesignProtocol(core::scoring::ScoreFunctionOP score_function, core::Real const mc_temp, core::Real const pert_mc_temp, core::Real const pert_dock_rot_mag, core::Real const pert_dock_trans_mag, core::Real const pert_pep_small_temp, core::Real const pert_pep_small_H, core::Real const pert_pep_small_L, core::Real const pert_pep_small_E, core::Real const pert_pep_shear_temp, core::Real const pert_pep_shear_H, core::Real const pert_pep_shear_L, core::Real const pert_pep_shear_E, core::Size const pert_pep_num_rep, core::Size const pert_num, core::Size const dock_design_loop_num, bool const no_design, bool const final_design_min, bool const use_soft_rep, bool const mc_initial_pose, bool const ncbb_design_first, bool const pymol, bool const keep_history)	protocols::ncbb::NcbbDockDesignProtocol
NcbbDockDesignProtocol(core::scoring::ScoreFunctionOP score_function, core::Real const mc_temp, core::Real const pert_dock_rot_mag, core::Real const pert_dock_trans_mag, core::Size const dock_design_loop_num, bool const no_design, bool const final_design_min, bool const pymol, bool const keep_history)	protocols::ncbb::NcbbDockDesignProtocol
no_design_	protocols::ncbb::NcbbDockDesignProtocol	private
operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(utility::tag::TagCOP, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)	protocols::ncbb::NcbbDockDesignProtocol	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
pert_dock_rot_mag_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_dock_trans_mag_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_mc_temp_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_num_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_num_rep_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_shear_E_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_shear_H_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_shear_L_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_shear_temp_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_small_E_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_small_H_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_small_L_	protocols::ncbb::NcbbDockDesignProtocol	private
pert_pep_small_temp_	protocols::ncbb::NcbbDockDesignProtocol	private
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
pymol_	protocols::ncbb::NcbbDockDesignProtocol	private
register_options()	protocols::moves::Mover	inlinestatic
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::moves::Mover	virtual
reset_status()	protocols::moves::Mover
save_state(SerializableState &state)	protocols::moves::Mover	virtual
score_fxn_	protocols::ncbb::NcbbDockDesignProtocol	private
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
setup_filter_stats()	protocols::ncbb::NcbbDockDesignProtocol
setup_pert_foldtree(core::pose::Pose &pose)	protocols::ncbb::NcbbDockDesignProtocol	private
show(std::ostream &output=std::cout) const	protocols::moves::Mover	virtual
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
use_soft_rep_	protocols::ncbb::NcbbDockDesignProtocol	private
~Mover()	protocols::moves::Mover	virtual
~NcbbDockDesignProtocol()	protocols::ncbb::NcbbDockDesignProtocol	inlinevirtual