protocols::frag_picker::DiversifyCrmsdByClustering Class Reference

selects fragments by running several selectors More...

#include <DiversifyCrmsdByClustering.hh>

Public Member Functions
	DiversifyCrmsdByClustering (core::Size frags_per_pos)
	Constructor sets the desired number of fragments and crmsd cutoff. More...
virtual void	select_fragments (ScoredCandidatesVector1 const &, ScoredCandidatesVector1 &)
	Selects desired number of fragments from a given set of candidates. More...
virtual	~DiversifyCrmsdByClustering ()
Public Member Functions inherited from protocols::frag_picker::FragmentSelectingRule
	FragmentSelectingRule (Size frags_per_pos)
	Constructor sets the desired number of fragments. More...
Size	frags_per_pos ()
	Says how many fragments will be selected for each position in a query sequence. More...
virtual	~FragmentSelectingRule ()

Private Member Functions
void	copy_coordinates (FragmentCandidateOP src, ObjexxFCL::FArray2D_double &dst)

Private Attributes
core::Real	resulting_cutoff_
utility::vector1 < ObjexxFCL::FArray2D_double >	xyz_
ObjexxFCL::FArray1D_double	weights_

Detailed Description

selects fragments by running several selectors

Constructor & Destructor Documentation

protocols::frag_picker::DiversifyCrmsdByClustering::DiversifyCrmsdByClustering ( core::Size  frags_per_pos )

inline

Constructor sets the desired number of fragments and crmsd cutoff.

virtual protocols::frag_picker::DiversifyCrmsdByClustering::~DiversifyCrmsdByClustering ( )

inlinevirtual

Member Function Documentation

void protocols::frag_picker::DiversifyCrmsdByClustering::copy_coordinates ( FragmentCandidateOP  src, ObjexxFCL::FArray2D_double &  dst  )

private

References core::pose::Pose::xyz(), and protocols::kinmatch::xyz().

void protocols::frag_picker::DiversifyCrmsdByClustering::select_fragments ( ScoredCandidatesVector1 const &  in, ScoredCandidatesVector1 &  out  )

virtual

Selects desired number of fragments from a given set of candidates.

Implements protocols::frag_picker::FragmentSelectingRule.

References numeric::average_link_clustering(), numeric::get_cluster_data(), j, numeric::model_quality::rms_wrapper(), and protocols::frag_picker::trDiversifyCrmsdByClustering.

Member Data Documentation

core::Real protocols::frag_picker::DiversifyCrmsdByClustering::resulting_cutoff_

private

ObjexxFCL::FArray1D_double protocols::frag_picker::DiversifyCrmsdByClustering::weights_

private

utility::vector1<ObjexxFCL::FArray2D_double> protocols::frag_picker::DiversifyCrmsdByClustering::xyz_

private

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/frag_picker/DiversifyCrmsdByClustering.hh
• symlinks/rosetta/src/protocols/frag_picker/DiversifyCrmsdByClustering.cc