#include <DockTaskFactory.hh>

Public Member Functions
	DockTaskFactory ()
	Default constructor. More...

	DockTaskFactory (DockTaskFactory const &old_instance)

virtual	~DockTaskFactory ()

void	create_and_attach_task_factory (DockingHighResOP docker, core::pose::Pose const &pose) const
	Creates an appropriate TaskFactory based on command line options and attach it to a DockingHighResOP Two arguments: DockingHighResOP and a pose. More...

void	set_default ()
	Sets booleans to default values. More...

void	register_options ()
	Associates relevant options with the DockTaskFactory class. More...

void	init_from_options ()
	Assigns user specified values to members using command line options. More...

void	set_norepack1 (bool norepack1)

void	set_norepack2 (bool norepack2)

void	set_design_chains (utility::vector1< char > design_chains)

void	set_additional_task_operarations (utility::vector1< core::pack::task::operation::TaskOperationOP > additional_task_operations)

void	add_additional_task_operaration (core::pack::task::operation::TaskOperationOP task_operation)

utility::vector1 < core::pack::task::operation::TaskOperationOP >	get_additional_task_operarations ()

void	set_interface_definition_task_operation (protocols::toolbox::task_operations::InterfaceTaskOperationOP interface_definition)

bool	get_norepack1 () const

bool	get_norepack2 () const

void	set_prepack_only (bool prepack_only)

Private Attributes
bool	resfile_

bool	norepack1_

bool	norepack2_

utility::vector1< char >	design_chains_

utility::vector1 < core::pack::task::operation::TaskOperationOP >	additional_task_operations_

bool	prepack_only_

toolbox::task_operations::InterfaceTaskOperationOP	restrict_to_interface_

Constructor & Destructor Documentation

protocols::docking::DockTaskFactory::DockTaskFactory ( )

Default constructor.

References init_from_options(), register_options(), and set_default().

protocols::docking::DockTaskFactory::DockTaskFactory ( DockTaskFactory const & old_instance )

References design_chains_, norepack1_, norepack2_, prepack_only_, resfile_, and restrict_to_interface_.

protocols::docking::DockTaskFactory::~DockTaskFactory ( )

virtual

Member Function Documentation

void protocols::docking::DockTaskFactory::add_additional_task_operaration ( core::pack::task::operation::TaskOperationOP task_operation )

References additional_task_operations_.

void protocols::docking::DockTaskFactory::create_and_attach_task_factory	(	DockingHighResOP	docker,
		core::pose::Pose const &	pose
	)		const

Creates an appropriate TaskFactory based on command line options and attach it to a DockingHighResOP Two arguments: DockingHighResOP and a pose.

References additional_task_operations_, chain, core::kinematics::FoldTree::cutpoint_by_jump(), design_chains_, core::pose::Pose::fold_tree(), norepack1_, norepack2_, core::pose::Pose::num_jump(), core::pose::Pose::pdb_info(), prepack_only_, resfile_, restrict_to_interface_, protocols::toolbox::task_operations::InterfaceTaskOperation::set_movable_jumps(), tf, and unboundrot.

Referenced by protocols::docking::DockMCMProtocol::apply(), and protocols::docking::DockingPrepackProtocol::finalize_setup().

utility::vector1< core::pack::task::operation::TaskOperationOP > protocols::docking::DockTaskFactory::get_additional_task_operarations ( )

References additional_task_operations_.

bool protocols::docking::DockTaskFactory::get_norepack1 ( ) const

inline

References norepack1_.

bool protocols::docking::DockTaskFactory::get_norepack2 ( ) const

inline

References norepack2_.

void protocols::docking::DockTaskFactory::init_from_options ( )

Assigns user specified values to members using command line options.

References design_chains_, option, resfile_, set_norepack1(), set_norepack2(), and user.

Referenced by DockTaskFactory().

void protocols::docking::DockTaskFactory::register_options ( )

Associates relevant options with the DockTaskFactory class.

References utility::options::OptionCollection::add_relevant(), and option.

Referenced by DockTaskFactory().

void protocols::docking::DockTaskFactory::set_additional_task_operarations ( utility::vector1< core::pack::task::operation::TaskOperationOP > additional_task_operations )

References additional_task_operations_.

void protocols::docking::DockTaskFactory::set_default ( )

Sets booleans to default values.

References additional_task_operations_, design_chains_, norepack1_, norepack2_, prepack_only_, resfile_, and restrict_to_interface_.

Referenced by DockTaskFactory().

void protocols::docking::DockTaskFactory::set_design_chains ( utility::vector1< char > design_chains )

inline

References design_chains_.

void protocols::docking::DockTaskFactory::set_interface_definition_task_operation ( protocols::toolbox::task_operations::InterfaceTaskOperationOP interface_definition )