protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors Class Reference

#include <RestrictToLoopsAndNeighbors.hh>

Public Types
typedef core::pack::task::operation::TaskOperation	parent

Public Member Functions
	RestrictToLoopsAndNeighbors ()
	default constructor More...
	RestrictToLoopsAndNeighbors (RestrictToLoopsAndNeighbors const &src)
	copy constructor More...
virtual	~RestrictToLoopsAndNeighbors ()
RestrictToLoopsAndNeighbors &	operator= (RestrictToLoopsAndNeighbors const &rhs)
	assignment operator More...
virtual core::pack::task::operation::TaskOperationOP	clone () const
virtual void	apply (core::pose::Pose const &pose, core::pack::task::PackerTask &task) const
bool	design_loop () const
void	set_design_loop (bool design_loop)
bool	include_neighbors () const
void	set_include_neighbors (bool include_neighbors)
core::Real	cutoff_distance () const
void	set_cutoff_distance (core::Real cutoff_distance)
loops::LoopsCOP	loops () const
void	set_loops (loops::LoopsCOP loops)

Private Member Functions
void	init ()
void	init_for_equal_operator_and_copy_constructor (RestrictToLoopsAndNeighbors &lhs, RestrictToLoopsAndNeighbors const &rhs)

Private Attributes
bool	design_loop_
bool	include_neighbors_
core::Real	cutoff_distance_
loops::LoopsCOP	loops_

Member Typedef Documentation

typedef core::pack::task::operation::TaskOperation protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::parent

Constructor & Destructor Documentation

protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::RestrictToLoopsAndNeighbors

(

)

default constructor

References init().

Referenced by clone().

protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::RestrictToLoopsAndNeighbors

(

RestrictToLoopsAndNeighbors const &

src

)

copy constructor

References init_for_equal_operator_and_copy_constructor().

protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::~RestrictToLoopsAndNeighbors ( )

virtual

Member Function Documentation

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::apply ( core::pose::Pose const &  pose, core::pack::task::PackerTask &  task  ) const

virtual

Implements core::pack::task::operation::TaskOperation.

References core::pack::task::operation::RestrictResidueToRepacking::apply(), core::pack::task::operation::PreventRepacking::apply(), cutoff_distance(), design_loop(), include_neighbors(), core::pack::task::operation::RestrictResidueToRepacking::include_residue(), core::pack::task::operation::PreventRepacking::include_residue(), loops(), core::pose::symmetry::make_residue_mask_symmetric(), protocols::loops::select_loop_residues(), and core::pose::Pose::total_residue().

TaskOperationOP protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::clone ( ) const

virtual

Implements core::pack::task::operation::TaskOperation.

References RestrictToLoopsAndNeighbors().

core::Real protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::cutoff_distance

(

)

const

References cutoff_distance_.

Referenced by apply(), and set_cutoff_distance().

bool protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::design_loop

(

)

const

References design_loop_.

Referenced by apply(), and set_design_loop().

bool protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::include_neighbors

(

)

const

References include_neighbors_.

Referenced by apply(), and set_include_neighbors().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::init ( void  )

private

References set_cutoff_distance(), set_design_loop(), set_include_neighbors(), and set_loops().

Referenced by RestrictToLoopsAndNeighbors().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::init_for_equal_operator_and_copy_constructor ( RestrictToLoopsAndNeighbors &  lhs, RestrictToLoopsAndNeighbors const &  rhs  )

private

References cutoff_distance_, design_loop_, include_neighbors_, and loops_.

Referenced by operator=(), and RestrictToLoopsAndNeighbors().

loops::LoopsCOP protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::loops

(

)

const

References loops_.

Referenced by apply(), and set_loops().

RestrictToLoopsAndNeighbors & protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::operator=

(

RestrictToLoopsAndNeighbors const &

rhs

)

assignment operator

References init_for_equal_operator_and_copy_constructor().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::set_cutoff_distance

(

core::Real

cutoff_distance

)

References cutoff_distance(), and cutoff_distance_.

Referenced by init(), and protocols::antibody::design::AntibodyCDRDesigner::setup_task_factory().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::set_design_loop

(

bool

design_loop

)

References design_loop(), and design_loop_.

Referenced by init(), and protocols::antibody::design::AntibodyCDRDesigner::setup_task_factory().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::set_include_neighbors

(

bool

include_neighbors

)

References include_neighbors(), and include_neighbors_.

Referenced by init(), and protocols::antibody::design::AntibodyCDRDesigner::setup_task_factory().

void protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::set_loops

(

loops::LoopsCOP

loops

)

References loops(), and loops_.

Referenced by init(), and protocols::antibody::design::AntibodyCDRDesigner::setup_task_factory().

Member Data Documentation

core::Real protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::cutoff_distance_

private

Referenced by cutoff_distance(), init_for_equal_operator_and_copy_constructor(), and set_cutoff_distance().

bool protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::design_loop_

private

Referenced by design_loop(), init_for_equal_operator_and_copy_constructor(), and set_design_loop().

bool protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::include_neighbors_

private

Referenced by include_neighbors(), init_for_equal_operator_and_copy_constructor(), and set_include_neighbors().

loops::LoopsCOP protocols::toolbox::task_operations::RestrictToLoopsAndNeighbors::loops_

private

Referenced by init_for_equal_operator_and_copy_constructor(), loops(), and set_loops().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/toolbox/task_operations/RestrictToLoopsAndNeighbors.hh
• symlinks/rosetta/src/protocols/toolbox/task_operations/RestrictToLoopsAndNeighbors.cc