| add_mover_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| add_or_delete_mover_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| anneal_missing(protocols::moves::MonteCarloOP monte_carlo) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| apply(core::pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| create() | protocols::moves::Mover | virtual |
| delete_mover_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| display_progress(pose::Pose &pose, Size const cycle_num) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| do_main_loop(pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| do_test_move(pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| enumerate_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| from_scratch_mover_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_all_res_list(pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| initialize_for_movie(pose::Pose const &pose) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| initialize_movers() | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| initialize_pose_if_empty(pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| initialize_scorefunction() | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| just_preminimize_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| max_missing_weight_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| minimize_single_res_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| missing_weight_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| missing_weight_interval_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| model_tag() const | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | inline |
| model_tag_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| move_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| movie_file_accepted_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| movie_file_trial_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| name() | protocols::moves::Mover | inlinestatic |
| operator=(Mover const &other) | protocols::moves::Mover | |
| options_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| out_path() const | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | inline |
| out_path_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| output_movie(pose::Pose const &pose, Size const k, std::string const tag, std::string const &movie_file) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| preminimize_pose(pose::Pose &pose) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| resample_mover_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| reset_status() | protocols::moves::Mover | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| scorefxn_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| scorefxn_input_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_enumerate(bool const setting) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | inline |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_minimize_single_res(bool const minimize_single_res) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| set_model_tag(std::string const &setting) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | inline |
| set_move(SWA_Move const setting) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | inline |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_options(StepWiseMonteCarloOptionsCOP options) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | |
| set_out_path(std::string const &setting) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | inline |
| set_preminimize(bool const setting) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | inline |
| setup_stepwise_modeler() | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| show_scores(core::pose::Pose &pose, std::string const tag) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| stepwise_modeler_ | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | private |
| StepWiseMonteCarlo(core::scoring::ScoreFunctionCOP scorefxn) | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
| ~StepWiseMonteCarlo() | protocols::stepwise::monte_carlo::rna::StepWiseMonteCarlo | |
1.8.7