| add_motif(Motif const &d) | protocols::motif_hash::MotifHash | |
| add_motif(Motif const &d, Key const &key) | protocols::motif_hash::MotifHash | |
| add_motif_shift(Motif const &d, Real6 const &shift) | protocols::motif_hash::MotifHash | |
| angle_resl_ | protocols::motif_hash::MotifHash | |
| begin() | protocols::motif_hash::MotifHash | inline |
| bin_index(Real6 const &rt) const | protocols::motif_hash::MotifHash | |
| bin_index(Motif const &m) const | protocols::motif_hash::MotifHash | |
| bin_index_hasher typedef | protocols::motif_hash::MotifHash | |
| cart_resl_ | protocols::motif_hash::MotifHash | |
| cart_size() const | protocols::motif_hash::MotifHash | inline |
| cart_size_ | protocols::motif_hash::MotifHash | |
| ClashChecker typedef | protocols::motif_hash::MotifHash | |
| count_motifs(Real6 const &rt) const | protocols::motif_hash::MotifHash | |
| count_motifs(Key const &k) const | protocols::motif_hash::MotifHash | |
| dump_matching_motifs(Pose const &pose1, Pose const &pose2, Real radius, std::ostream &out, int &count, ClashChecker clash_check=NULL, bool print=false) const | protocols::motif_hash::MotifHash | |
| dump_matching_motifs(Pose const &pose1, Pose const &pose2, std::ostream &out, int &count, ClashChecker clash_check=NULL, bool print=false) const | protocols::motif_hash::MotifHash | |
| end() | protocols::motif_hash::MotifHash | inline |
| find_motifs(Key const &k, ResPairMotifs &results) const | protocols::motif_hash::MotifHash | |
| find_motifs(Real6 const &rt, ResPairMotifs &results) const | protocols::motif_hash::MotifHash | |
| find_motifs_with_radius(Real6 const &rt, Real radius, vector1< Motif > &results) const | protocols::motif_hash::MotifHash | |
| generate_scoring_hash() | protocols::motif_hash::MotifHash | |
| get_matching_motifs(Pose const &pose1, Pose const &pose2, MotifHits &hits, ClashChecker clash_check=NULL, Real radius=0.0) const | protocols::motif_hash::MotifHash | |
| get_matching_motifs(Pose const &pose1, Pose const &pose2, Bools const &useres1, Bools const &useres2, MotifHits &hits, ClashChecker clash_check=NULL, Real radius=0.0) const | protocols::motif_hash::MotifHash | |
| get_matching_motifs(Pose const &pose, core::pack::task::PackerTaskCOP ptask, MotifHits &hits, ClashChecker clash_check=NULL, Real radius=0.0) const | protocols::motif_hash::MotifHash | |
| get_matching_motifs_rotsetop(Pose const &pose, core::pack::task::PackerTaskCOP ptask=NULL, Real radius=0.6, ClashChecker clash_check=NULL) const | protocols::motif_hash::MotifHash | |
| hasher() const | protocols::motif_hash::MotifHash | inline |
| hasher() | protocols::motif_hash::MotifHash | inline |
| hasher_ | protocols::motif_hash::MotifHash | |
| Key typedef | protocols::motif_hash::MotifHash | |
| key_set() const | protocols::motif_hash::MotifHash | inline |
| key_set_ | protocols::motif_hash::MotifHash | |
| KeySet typedef | protocols::motif_hash::MotifHash | |
| Motif typedef | protocols::motif_hash::MotifHash | |
| motif_hash_ | protocols::motif_hash::MotifHash | |
| motif_score(Real6 const &rt) const | protocols::motif_hash::MotifHash | |
| MotifHash() | protocols::motif_hash::MotifHash | |
| MotifHash(Real cart_size, Real cart_resl, Real ang_resl) | protocols::motif_hash::MotifHash | |
| MotifHash(ResPairMotifs const &motifs) | protocols::motif_hash::MotifHash | |
| MotifMap typedef | protocols::motif_hash::MotifHash | |
| num_motifs() | protocols::motif_hash::MotifHash | inline |
| operator<<(std::ostream &out, MotifHash const &x) | protocols::motif_hash::MotifHash | friend |
| print_matching_motifs(Pose const &pose1, Pose const &pose2, std::ostream &out, ClashChecker clash_check=NULL) const | protocols::motif_hash::MotifHash | |
| score_hash_ | protocols::motif_hash::MotifHash | |
| ScoreMap typedef | protocols::motif_hash::MotifHash | |
| set_score(Key const &k, float const &score) | protocols::motif_hash::MotifHash | |
| SixDCoordinateBinner typedef | protocols::motif_hash::MotifHash | |
| stat_matching_motifs(Pose const &pose1, Pose const &pose2, std::map< std::string, Real > &stats, ClashChecker clash_check=NULL, Real radius=0.0) const | protocols::motif_hash::MotifHash | |