protocols::rotamer_sampler::protein Namespace Reference

Classes
class	ProteinBetaAntiParallelRotamer
class	ProteinFragmentRotamer
class	ProteinMainChainRotamer

Typedefs
typedef utility::pointer::owning_ptr < ProteinBetaAntiParallelRotamer >	ProteinBetaAntiParallelRotamerOP
typedef utility::pointer::owning_ptr < ProteinBetaAntiParallelRotamer const >	ProteinBetaAntiParallelRotamerCOP
typedef utility::pointer::owning_ptr < ProteinFragmentRotamer >	ProteinFragmentRotamerOP
typedef utility::pointer::owning_ptr < ProteinFragmentRotamer const >	ProteinFragmentRotamerCOP
typedef utility::pointer::owning_ptr < ProteinMainChainRotamer >	ProteinMainChainRotamerOP
typedef utility::pointer::owning_ptr < ProteinMainChainRotamer const >	ProteinMainChainRotamerCOP

Functions
void	do_set_xyz (pose::Pose const &pose, Size const i, pose::Pose &scratch_pose, Size const i_scratch, core::kinematics::Stub const &stub)
void	generate_beta_database_test ()

Typedef Documentation

typedef utility::pointer::owning_ptr< ProteinBetaAntiParallelRotamer const > protocols::rotamer_sampler::protein::ProteinBetaAntiParallelRotamerCOP

typedef utility::pointer::owning_ptr< ProteinBetaAntiParallelRotamer > protocols::rotamer_sampler::protein::ProteinBetaAntiParallelRotamerOP

typedef utility::pointer::owning_ptr< ProteinFragmentRotamer const > protocols::rotamer_sampler::protein::ProteinFragmentRotamerCOP

typedef utility::pointer::owning_ptr< ProteinFragmentRotamer > protocols::rotamer_sampler::protein::ProteinFragmentRotamerOP

typedef utility::pointer::owning_ptr< ProteinMainChainRotamer const > protocols::rotamer_sampler::protein::ProteinMainChainRotamerCOP

typedef utility::pointer::owning_ptr< ProteinMainChainRotamer > protocols::rotamer_sampler::protein::ProteinMainChainRotamerOP

Function Documentation

void protocols::rotamer_sampler::protein::do_set_xyz	(	pose::Pose const &	pose,
		Size const	i,
		pose::Pose &	scratch_pose,
		Size const	i_scratch,
		core::kinematics::Stub const &	stub
	)

References core::kinematics::Stub::global2local(), core::chemical::ResidueType::has(), core::pose::Pose::residue_type(), core::pose::Pose::set_xyz(), and core::pose::Pose::xyz().

Referenced by generate_beta_database_test().

void protocols::rotamer_sampler::protein::generate_beta_database_test

(

)

References utility::io::ozstream::close(), protocols::stepwise::sampling::general::StepWiseClustererSilentBased::cluster(), cluster_radius, protocols::stepwise::sampling::general::StepWiseClustererSilentBased::clustered_pose_list(), do_set_xyz(), core::scoring::hbonds::HBond::don_res(), FA_STANDARD, fill_hbond_set(), protocols::stepwise::get_file_name(), core::chemical::ChemicalManager::get_instance(), getScoreFunction(), core::scoring::hbonds::HBondSet::hbond(), j, protocols::stepwise::load_s_and_l(), LOWER_TERMINUS, core::pose::make_pose_from_sequence(), core::kinematics::FoldTree::new_jump(), core::scoring::hbonds::HBondSet::nhbonds(), out::nstruct, out::file::o, option, out, protocols::stepwise::sampling::general::StepWiseClustererSilentBased::output_silent_file(), core::import_pose::pose_from_pdb(), core::pose::remove_variant_type_from_pose_residue(), core::chemical::ChemicalManager::residue_type_set(), s, sequence, protocols::stepwise::sampling::general::StepWiseClustererSilentBased::set_calc_rms_res(), protocols::stepwise::sampling::general::StepWiseClustererSilentBased::set_cluster_radius(), protocols::stepwise::sampling::general::StepWiseClustererSilentBased::set_max_decoys(), protocols::stepwise::sampling::general::StepWiseClustererSilentBased::set_rename_tags(), protocols::stepwise::sampling::general::StepWiseClustererSilentBased::set_score_diff_cut(), out::file::silent, tag, UPPER_TERMINUS, and user.