Record snapshots of the simulation in the PDB format. More...

#include <PdbLogger.hh>

Protected Member Functions
void	log_beginning_ (Pose const &pose)
	Record the input pose. More...

void	log_monte_carlo_ (protocols::moves::MonteCarlo const &monte_carlo)
	Record the pose after each Monte Carlo step. More...

Protected Member Functions inherited from protocols::loop_modeling::loggers::Logger
virtual void	log_iteration_ (Pose const &)
	Reimplemented by subclasses to record the start of another iteration. More...

virtual void	log_ending_ (Pose const &)
	Reimplemented by subclasses to record the end of a simulation. More...

Size	get_iteration_as_int () const
	Return the current iteration as an integer. More...

Size	get_max_iteration_as_int () const
	Return the number of iterations that will be run in the current simulation as an integer. More...

string	get_iteration_as_string () const
	Return the current iteration as a string. More...

string	get_max_iteration_as_string () const
	Return the number of iterations that will be run in the current simulation as an string. More...

Size	get_num_digits (Size value) const
	Return the number of digits in the given number. More...

Private Member Functions
void	log_pose (Pose const &pose) const
	Write the given pose to disk. The file name will incorporate the current iteration. More...

void	log_pose (Pose const &pose, Size iteration) const
	Write the given pose to disk. The file name will incorporate the given iteration. More...

Additional Inherited Members
Public Member Functions inherited from protocols::loop_modeling::loggers::Logger
void	log_beginning (Pose const &pose, Size I, Size J, Size K)
	Record the beginning of a simulation. More...

void	log_beginning (Pose const &pose, utility::vector1< Size > iterations)
	Record the beginning of a simulation. More...

void	log_iteration (Pose const &pose, Size i, Size j, Size k)
	Record the start of another iteration. More...

void	log_monte_carlo (protocols::moves::MonteCarlo const &monte_carlo)
	Record the result of a MonteCarlo acceptance check. More...

void	log_monte_carlo (protocols::moves::MonteCarloCOP monte_carlo)
	Record the result of a MonteCarlo acceptance check. More...

void	log_ending (Pose const &pose)
	Record the end of a simulation. More...

Detailed Description

Record snapshots of the simulation in the PDB format.

Member Function Documentation

void protocols::loop_modeling::loggers::PdbLogger::log_beginning_ ( Pose const & pose )

protectedvirtual

Record the input pose.

void protocols::loop_modeling::loggers::PdbLogger::log_monte_carlo_ ( protocols::moves::MonteCarlo const & monte_carlo )

protectedvirtual

Record the pose after each Monte Carlo step.

void protocols::loop_modeling::loggers::PdbLogger::log_pose ( Pose const & pose ) const

private

Write the given pose to disk. The file name will incorporate the current iteration.

void protocols::loop_modeling::loggers::PdbLogger::log_pose	(	Pose const &	pose,
		Size	iteration
	)		const

private

Write the given pose to disk. The file name will incorporate the given iteration.

The documentation for this class was generated from the following files: