| allow_insert_ | protocols::toolbox::AllowInsert | private |
| AllowInsert(core::pose::Pose const &pose) | protocols::toolbox::AllowInsert | |
| AllowInsert(AllowInsert const &src) | protocols::toolbox::AllowInsert | |
| and_allow_insert(AllowInsertOP allow_insert_in) | protocols::toolbox::AllowInsert | |
| append_residue(core::pose::Pose const &pose, Size const &i, bool const &setting) | protocols::toolbox::AllowInsert | |
| atom_ids_in_res_ | protocols::toolbox::AllowInsert | private |
| calculate_atom_id_domain_map(core::pose::Pose const &pose) | protocols::toolbox::AllowInsert | |
| calculate_atom_id_map(core::pose::Pose const &pose, std::map< core::Size, core::Size > const &res_map, core::kinematics::FoldTree const &scratch_fold_tree, std::map< core::id::AtomID, core::id::AtomID > &atom_id_map) | protocols::toolbox::AllowInsert | |
| calculated_atom_id_domain_map() | protocols::toolbox::AllowInsert | |
| calculated_atom_id_domain_map_ | protocols::toolbox::AllowInsert | private |
| clone() const | protocols::toolbox::AllowInsert | virtual |
| force_ideal_chainbreak_ | protocols::toolbox::AllowInsert | private |
| get(Size const &i) const | protocols::toolbox::AllowInsert | |
| get(core::id::AtomID const &atom_id) const | protocols::toolbox::AllowInsert | |
| get(core::id::TorsionID const &torsion_id, core::conformation::Conformation const &conformation) const | protocols::toolbox::AllowInsert | |
| get_domain(Size const &i) const | protocols::toolbox::AllowInsert | |
| get_domain(core::id::AtomID const &atom_id) const | protocols::toolbox::AllowInsert | |
| has_domain(core::id::AtomID const &atom_id) const | protocols::toolbox::AllowInsert | |
| initialize(core::pose::Pose const &pose) | protocols::toolbox::AllowInsert | private |
| map_to_original_ | protocols::toolbox::AllowInsert | private |
| named_atom_id_map_ | protocols::toolbox::AllowInsert | private |
| nres() const | protocols::toolbox::AllowInsert | inline |
| nres_ | protocols::toolbox::AllowInsert | private |
| operator=(AllowInsert const &src) | protocols::toolbox::AllowInsert | |
| renumber_after_variant_changes(core::pose::Pose const &pose) | protocols::toolbox::AllowInsert | |
| set(Size const &i, bool const &setting) | protocols::toolbox::AllowInsert | |
| set(core::id::AtomID const &atom_id, bool const &setting) | protocols::toolbox::AllowInsert | |
| set(bool const &setting) | protocols::toolbox::AllowInsert | |
| set_domain(Size const &i, Size const &setting) | protocols::toolbox::AllowInsert | |
| set_domain(core::id::AtomID const &atom_id, Size const &setting) | protocols::toolbox::AllowInsert | |
| set_domain(Size const &setting) | protocols::toolbox::AllowInsert | |
| set_force_ideal_chainbreak(bool const &setting) | protocols::toolbox::AllowInsert | inline |
| set_phosphate(core::Size const &i, core::pose::Pose const &pose, bool const &setting) | protocols::toolbox::AllowInsert | |
| set_phosphate_domain(core::Size const &i, core::pose::Pose const &pose, Size const &setting) | protocols::toolbox::AllowInsert | |
| show() | protocols::toolbox::AllowInsert | |
| ~AllowInsert() | protocols::toolbox::AllowInsert | virtual |
1.8.7