protocols::protein_interface_design::filters::InterfaceHolesFilter Class Reference

#include <InterfaceHolesFilter.hh>

Public Member Functions
	InterfaceHolesFilter ()
	InterfaceHolesFilter (core::Size const rb_jump, core::Real const threshold)
bool	apply (core::pose::Pose const &pose) const
	Returns true if the given pose passes the filter, false otherwise. More...
protocols::filters::FilterOP	clone () const
protocols::filters::FilterOP	fresh_instance () const
	InterfaceHolesFilter (InterfaceHolesFilter const &init)
void	report (std::ostream &out, core::pose::Pose const &pose) const
core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
core::Real	compute (core::pose::Pose const &pose) const
virtual	~InterfaceHolesFilter ()
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Attributes
core::Size	rb_jump_
core::Real	threshold_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter ( )

inline

References filters.

Referenced by clone(), protocols::protein_interface_design::filters::InterfaceHolesFilterCreator::create_filter(), and fresh_instance().

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter ( core::Size const  rb_jump, core::Real const  threshold  )

inline

References filters, rb_jump_, and threshold_.

protocols::protein_interface_design::filters::InterfaceHolesFilter::InterfaceHolesFilter ( InterfaceHolesFilter const &  init )

inline

References filters, rb_jump_, and threshold_.

protocols::protein_interface_design::filters::InterfaceHolesFilter::~InterfaceHolesFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::InterfaceHolesFilter::apply ( core::pose::Pose const &  pose ) const

virtual

Returns true if the given pose passes the filter, false otherwise.

Implements protocols::filters::Filter.

References compute(), threshold_, and protocols::protein_interface_design::filters::TR.

protocols::filters::FilterOP protocols::protein_interface_design::filters::InterfaceHolesFilter::clone ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References InterfaceHolesFilter().

core::Real protocols::protein_interface_design::filters::InterfaceHolesFilter::compute

(

core::pose::Pose const &

pose

)

const

References protocols::rigid::RigidBodyTransMover::apply(), protocols::scoring::Interface::calculate(), holes_decoy, rb_jump_, protocols::rigid::RigidBodyTransMover::step_size(), protocols::protein_interface_design::filters::TR, protocols::stepwise::translate(), and weight.

Referenced by apply(), report(), and report_sm().

protocols::filters::FilterOP protocols::protein_interface_design::filters::InterfaceHolesFilter::fresh_instance ( ) const

inlinevirtual

Implements protocols::filters::Filter.

References InterfaceHolesFilter().

void protocols::protein_interface_design::filters::InterfaceHolesFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  , protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

References rb_jump_, threshold_, and protocols::protein_interface_design::filters::TR.

void protocols::protein_interface_design::filters::InterfaceHolesFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute(), and rb_jump_.

core::Real protocols::protein_interface_design::filters::InterfaceHolesFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

Member Data Documentation

core::Size protocols::protein_interface_design::filters::InterfaceHolesFilter::rb_jump_

private

Referenced by compute(), InterfaceHolesFilter(), parse_my_tag(), and report().

core::Real protocols::protein_interface_design::filters::InterfaceHolesFilter::threshold_

private

Referenced by apply(), InterfaceHolesFilter(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/protein_interface_design/filters/InterfaceHolesFilter.hh
• symlinks/rosetta/src/protocols/protein_interface_design/filters/InterfaceHolesFilter.cc