protocols::sic_dock::scores::MotifHashRigidScore Class Reference

#include <MotifHashRigidScore.hh>

Public Member Functions
	MotifHashRigidScore (Pose const &pose1, Pose const &pose2)
virtual	~MotifHashRigidScore ()
core::Real	score (Xforms const &x1, Xforms const &x2) const
core::Real	score_meta (Xforms const &x1, Xforms const &x2, int &nsheet, Real &rawscore, Real &sselem_score, Real &coverage, Real &res_score, Real &sheetsc, int &nres, int &Nhh, int &Nee, int &Neh, int &Nh, int &Ne, int &Nl) const
int	dump_matching_motifs (Pose const &pose1, Pose const &pose2, std::ostream &out, int &count, xyzStripeHashPoseCAP clash_check=NULL, bool print=false) const
int	dump_matching_motifs (Xforms const &x1s, Xforms const &x2s, std::ostream &out, xyzStripeHashPoseCAP clash_check=NULL, bool print=false) const
std::string	type () const
void	show (std::ostream &out, int width=10) const
void	show (std::ostream &out, Xforms const &x1, Xforms const &x2, int width=10) const
void	show (std::ostream &out, Xforms const &x1, Xforms const &x2, xyzStripeHashPoseCAP clash_check, int width=10) const
protocols::motif_hash::MotifHashCAP	motif_hash () const
core::Size	nhashlookups () const
Public Member Functions inherited from protocols::sic_dock::RigidScore
virtual	~RigidScore ()

Private Types
typedef std::map< std::string, Real >	Stats
typedef std::pair< int, int >	intint
typedef std::pair < numeric::xyzVector< float > , int >	VecIR

Private Member Functions
	MotifHashRigidScore ()

Private Attributes
Pose	pose1_
Pose	pose2_
numeric::Xforms	bbx1_
numeric::Xforms	bbx2_
protocols::motif_hash::MotifHashCAP	mh_
protocols::motif_hash::XformScoreCAP	xs_
protocols::motif_hash::XformScoreCAP	xsee_
protocols::motif_hash::XformScoreCAP	xseh_
protocols::motif_hash::XformScoreCAP	xshe_
protocols::motif_hash::XformScoreCAP	xshh_
protocols::motif_hash::XformScoreCAP	xspp_
protocols::fldsgn::topology::SS_Info2 *	ssinfo1_
protocols::fldsgn::topology::SS_Info2 *	ssinfo2_
core::Size	nss1_
core::Size	nss2_
xyzStripeHashPose *	reshash_
utility::vector1< std::pair < numeric::xyzVector< float > , int > >	reslist_
bool	hash_pose1_
std::string	ss1_
std::string	ss2_
core::Size	nhashlookups_

Additional Inherited Members
Protected Types inherited from protocols::sic_dock::RigidScore
typedef core::Real	Real
typedef core::Size	Size
typedef core::pose::Pose	Pose
typedef numeric::xyzVector< Real >	Vec
typedef numeric::xyzMatrix< Real >	Mat
typedef utility::vector1< Vec >	Vecs
typedef utility::vector1< Real >	Reals
typedef utility::vector1< Size >	Sizes
typedef numeric::Xforms	Xforms
typedef utility::vector1 < RigidScoreCOP >	Scores

Member Typedef Documentation

typedef std::pair<int,int> protocols::sic_dock::scores::MotifHashRigidScore::intint

private

typedef std::map<std::string,Real> protocols::sic_dock::scores::MotifHashRigidScore::Stats

private

typedef std::pair<numeric::xyzVector<float>,int> protocols::sic_dock::scores::MotifHashRigidScore::VecIR

private

Constructor & Destructor Documentation

protocols::sic_dock::scores::MotifHashRigidScore::MotifHashRigidScore	(	Pose const &	pose1,
		Pose const &	pose2
	)

References bbx1_, bbx2_, protocols::sic_dock::scores::C, protocols::sic_dock::scores::CA, protocols::sic_dock::CBorCA, protocols::motif_hash::MotifHashManager::get_instance(), core::conformation::Residue::has(), hash_pose1_, core::scoring::dssp::Dssp::insert_ss_into_pose_no_IG_helix(), MAX_MOTIF_D2, mh_, protocols::motif_hash::MotifHashManager::motif_hash_from_cli(), protocols::sic_dock::scores::N, core::pose::Pose::n_residue(), pose1_, pose2_, reshash_, core::pose::Pose::residue(), reslist_, core::pose::Pose::secstruct(), ss1_, ss2_, core::pose::Pose::total_residue(), protocols::motif_hash::MotifHashManager::xform_score_ee_from_cli(), protocols::motif_hash::MotifHashManager::xform_score_eh_from_cli(), protocols::motif_hash::MotifHashManager::xform_score_from_cli(), protocols::motif_hash::MotifHashManager::xform_score_he_from_cli(), protocols::motif_hash::MotifHashManager::xform_score_hh_from_cli(), protocols::motif_hash::MotifHashManager::xform_score_sspair_from_cli(), xs_, xsee_, xseh_, xshe_, xshh_, xspp_, and core::conformation::Residue::xyz().

protocols::sic_dock::scores::MotifHashRigidScore::~MotifHashRigidScore ( )

virtual

References reshash_, ssinfo1_, and ssinfo2_.

protocols::sic_dock::scores::MotifHashRigidScore::MotifHashRigidScore ( )

inlineprivate

Member Function Documentation

int protocols::sic_dock::scores::MotifHashRigidScore::dump_matching_motifs	(	Pose const &	pose1,
		Pose const &	pose2,
		std::ostream &	out,
		int &	count,
		xyzStripeHashPoseCAP	clash_check = NULL,
		bool	print = false
	)		const

References mh_, mh::motif_match_radius, and option.

Referenced by dump_matching_motifs().

int protocols::sic_dock::scores::MotifHashRigidScore::dump_matching_motifs	(	Xforms const &	x1s,
		Xforms const &	x2s,
		std::ostream &	out,
		xyzStripeHashPoseCAP	clash_check = NULL,
		bool	print = false
	)		const

References dump_matching_motifs(), protocols::motif_hash::MotifHashManager::get_instance(), mh_, protocols::motif_hash::MotifHashManager::motif_hash_from_cli(), pose1_, pose2_, and protocols::sic_dock::xform_pose().

protocols::motif_hash::MotifHashCAP protocols::sic_dock::scores::MotifHashRigidScore::motif_hash ( ) const

inline

References mh_.

core::Size protocols::sic_dock::scores::MotifHashRigidScore::nhashlookups ( ) const

inline

References nhashlookups_.

core::Real protocols::sic_dock::scores::MotifHashRigidScore::score ( Xforms const &  x1, Xforms const &  x2  ) const

virtual

Implements protocols::sic_dock::RigidScore.

References protocols::match::upstream::b, c, j, l, and score_meta().

core::Real protocols::sic_dock::scores::MotifHashRigidScore::score_meta	(	Xforms const &	x1,
		Xforms const &	x2,
		int &	nsheet,
		Real &	rawscore,
		Real &	sselem_score,
		Real &	coverage,
		Real &	res_score,
		Real &	sheetsc,
		int &	nres,
		int &	Nhh,
		int &	Nee,
		int &	Neh,
		int &	Nh,
		int &	Ne,
		int &	Nl
	)		const

References bbx1_, bbx2_, numeric::geometry::hashing::xyzStripeHash::fill_pairs(), protocols::sic_dock::scores::get_rt6(), hash_pose1_, mh::score::max_contact_pairs, mh::score::min_contact_pairs, nhashlookups_, mh::score::noloops, option, pose1_, pose2_, raw, reshash_, reslist_, core::pose::Pose::secstruct(), ss, ss1_, ss2_, basic::options::OptionKeys::mh::score::strand_pair_weight, xs_, xsee_, xseh_, xshe_, xshh_, and xspp_.

Referenced by score(), and show().

void protocols::sic_dock::scores::MotifHashRigidScore::show ( std::ostream &  out, int  width = 10  ) const

virtual

Reimplemented from protocols::sic_dock::RigidScore.

References protocols::motif_hash::MotifHashManager::get_instance(), mh_, and protocols::motif_hash::MotifHashManager::motif_hash_from_cli().

Referenced by show().

void protocols::sic_dock::scores::MotifHashRigidScore::show ( std::ostream &  out, Xforms const &  x1, Xforms const &  x2, int  width = 10  ) const

virtual

Reimplemented from protocols::sic_dock::RigidScore.

References show().

void protocols::sic_dock::scores::MotifHashRigidScore::show	(	std::ostream &	out,
		Xforms const &	x1,
		Xforms const &	x2,
		xyzStripeHashPoseCAP	clash_check,
		int	width = 10
	)		const

References protocols::motif_hash::MotifHashManager::get_instance(), protocols::abinitio::abscript::I, mh_, protocols::motif_hash::MotifHashManager::motif_hash_from_cli(), mh::motif_match_radius, nres, option, pose1_, pose2_, score_meta(), and protocols::sic_dock::xform_pose().

std::string protocols::sic_dock::scores::MotifHashRigidScore::type ( ) const

inlinevirtual

Implements protocols::sic_dock::RigidScore.

Member Data Documentation

numeric::Xforms protocols::sic_dock::scores::MotifHashRigidScore::bbx1_

private

Referenced by MotifHashRigidScore(), and score_meta().

numeric::Xforms protocols::sic_dock::scores::MotifHashRigidScore::bbx2_

private

Referenced by MotifHashRigidScore(), and score_meta().

bool protocols::sic_dock::scores::MotifHashRigidScore::hash_pose1_

private

Referenced by MotifHashRigidScore(), and score_meta().

protocols::motif_hash::MotifHashCAP protocols::sic_dock::scores::MotifHashRigidScore::mh_

mutableprivate

Referenced by dump_matching_motifs(), motif_hash(), MotifHashRigidScore(), and show().

core::Size protocols::sic_dock::scores::MotifHashRigidScore::nhashlookups_

mutableprivate

Referenced by nhashlookups(), and score_meta().

core::Size protocols::sic_dock::scores::MotifHashRigidScore::nss1_

private

core::Size protocols::sic_dock::scores::MotifHashRigidScore::nss2_

private

Pose protocols::sic_dock::scores::MotifHashRigidScore::pose1_

private

Referenced by dump_matching_motifs(), MotifHashRigidScore(), score_meta(), and show().

Pose protocols::sic_dock::scores::MotifHashRigidScore::pose2_

private

Referenced by dump_matching_motifs(), MotifHashRigidScore(), score_meta(), and show().

xyzStripeHashPose* protocols::sic_dock::scores::MotifHashRigidScore::reshash_

private

Referenced by MotifHashRigidScore(), score_meta(), and ~MotifHashRigidScore().

utility::vector1< std::pair<numeric::xyzVector<float>,int> > protocols::sic_dock::scores::MotifHashRigidScore::reslist_

private

Referenced by MotifHashRigidScore(), and score_meta().

std::string protocols::sic_dock::scores::MotifHashRigidScore::ss1_

private

Referenced by MotifHashRigidScore(), and score_meta().

std::string protocols::sic_dock::scores::MotifHashRigidScore::ss2_

private

Referenced by MotifHashRigidScore(), and score_meta().

protocols::fldsgn::topology::SS_Info2* protocols::sic_dock::scores::MotifHashRigidScore::ssinfo1_

private

Referenced by ~MotifHashRigidScore().

protocols::fldsgn::topology::SS_Info2 * protocols::sic_dock::scores::MotifHashRigidScore::ssinfo2_

private

Referenced by ~MotifHashRigidScore().

protocols::motif_hash::XformScoreCAP protocols::sic_dock::scores::MotifHashRigidScore::xs_

private

Referenced by MotifHashRigidScore(), and score_meta().

protocols::motif_hash::XformScoreCAP protocols::sic_dock::scores::MotifHashRigidScore::xsee_

private

Referenced by MotifHashRigidScore(), and score_meta().

protocols::motif_hash::XformScoreCAP protocols::sic_dock::scores::MotifHashRigidScore::xseh_

private

Referenced by MotifHashRigidScore(), and score_meta().

protocols::motif_hash::XformScoreCAP protocols::sic_dock::scores::MotifHashRigidScore::xshe_

private

Referenced by MotifHashRigidScore(), and score_meta().

protocols::motif_hash::XformScoreCAP protocols::sic_dock::scores::MotifHashRigidScore::xshh_

private

Referenced by MotifHashRigidScore(), and score_meta().

protocols::motif_hash::XformScoreCAP protocols::sic_dock::scores::MotifHashRigidScore::xspp_

private

Referenced by MotifHashRigidScore(), and score_meta().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/sic_dock/scores/MotifHashRigidScore.hh
• symlinks/rosetta/src/protocols/sic_dock/scores/MotifHashRigidScore.cc