| add_dist_viol_to_assignments(core::pose::Pose native_pose) | protocols::noesy_assign::NoesyModule | |
| assign(core::Size cycle) | protocols::noesy_assign::NoesyModule | |
| assign(DecoyIterator const &begin, DecoyIterator const &end) | protocols::noesy_assign::NoesyModule | |
| assign() | protocols::noesy_assign::NoesyModule | |
| cmdline_options_activated() | protocols::noesy_assign::NoesyModule | static |
| crosspeaks() const | protocols::noesy_assign::NoesyModule | inline |
| crosspeaks_ | protocols::noesy_assign::NoesyModule | private |
| generate_constraint_files(core::pose::Pose const &pose, std::string const &cst_fa_file, std::string const &cst_centroid_file) const | protocols::noesy_assign::NoesyModule | |
| generate_constraint_files(core::pose::Pose const &pose, std::string const &cst_fa_file, std::string const &cst_centroid_file, core::Size min_seq_separation, core::Size min_quali=0, core::Size max_quali=4, bool ignore_elimination_candidates=true, bool elimination_candidates=false) const | protocols::noesy_assign::NoesyModule | |
| NoesyModule(std::string const &fasta_sequence) | protocols::noesy_assign::NoesyModule | |
| NoesyModule(std::string const &fasta_sequence) | protocols::noesy_assign::NoesyModule | |
| options_registered_ | protocols::noesy_assign::NoesyModule | privatestatic |
| read_input_files() | protocols::noesy_assign::NoesyModule | private |
| register_options() | protocols::noesy_assign::NoesyModule | static |
| reset() | protocols::noesy_assign::NoesyModule | |
| resonances_ | protocols::noesy_assign::NoesyModule | private |
| sequence() | protocols::noesy_assign::NoesyModule | inline |
| sequence_ | protocols::noesy_assign::NoesyModule | private |
| write_assignments(std::string file="use_cmd_line") | protocols::noesy_assign::NoesyModule | |
| ~NoesyModule() | protocols::noesy_assign::NoesyModule | virtual |
1.8.7