protocols::environment Namespace Reference

Namespaces
	claims

Classes
class	AutoCutData
class	AutoCutDataCreator
class	ClaimingMover
class	DofUnlock
class	EnvBeginMover
class	EnvClaimBroker
class	EnvEndMover
class	Environment
class	EXCN_Env_Passport
class	EXCN_Env_Security_Exception
class	ProtectedConformation

Typedefs
typedef utility::pointer::owning_ptr < AutoCutData >	AutoCutDataOP
typedef utility::pointer::owning_ptr < AutoCutData const >	AutoCutDataCOP
typedef utility::pointer::owning_ptr < ClaimingMover >	ClaimingMoverOP
typedef utility::pointer::owning_ptr < ClaimingMover const >	ClaimingMoverCOP
typedef utility::pointer::access_ptr < ClaimingMover >	ClaimingMoverAP
typedef utility::pointer::access_ptr < ClaimingMover const >	ClaimingMoverCAP
typedef utility::pointer::owning_ptr < DofUnlock >	DofUnlockOP
typedef utility::pointer::owning_ptr < DofUnlock const >	DofUnlockCOP
typedef utility::pointer::owning_ptr < EnvBeginMover >	EnvBeginMoverOP
typedef utility::pointer::owning_ptr < EnvBeginMover const >	EnvBeginMoverCOP
typedef utility::pointer::owning_ptr < EnvClaimBroker >	EnvClaimBrokerOP
typedef utility::pointer::owning_ptr < EnvClaimBroker const >	EnvClaimBrokerCOP
typedef utility::pointer::access_ptr < EnvClaimBroker >	EnvClaimBrokerAP
typedef utility::pointer::access_ptr < EnvClaimBroker const >	EnvClaimBrokerCAP
typedef utility::pointer::owning_ptr < EnvEndMover >	EnvEndMoverOP
typedef utility::pointer::owning_ptr < EnvEndMover const >	EnvEndMoverCOP
typedef utility::pointer::owning_ptr < Environment >	EnvironmentOP
typedef utility::pointer::owning_ptr < Environment const >	EnvironmentCOP
typedef utility::pointer::access_ptr < Environment >	EnvironmentAP
typedef utility::pointer::access_ptr < Environment const >	EnvironmentCAP
typedef utility::pointer::owning_ptr < ProtectedConformation >	ProtectedConformationOP
typedef utility::pointer::owning_ptr < ProtectedConformation const >	ProtectedConformationCOP
typedef utility::pointer::access_ptr < ProtectedConformation >	ProtectedConformationAP
typedef utility::pointer::access_ptr < ProtectedConformation const >	ProtectedConformationCAP

Functions
core::Size	construct_hash (ResidueElements const &r_elems, JumpElements const &j_elems, CutElements const &c_elems, CutBiasElements const &cb_elems)
template<typename T >
bool	compare_init_strength (T const &a, T const &b)
template<typename T >
bool	compare_ctrl_strength (T const &a, T const &b)
std::string	get_mover_name (std::stack< DofPassportCOP > const &unlocks)

Typedef Documentation

typedef utility::pointer::owning_ptr< AutoCutData const > protocols::environment::AutoCutDataCOP

typedef utility::pointer::owning_ptr< AutoCutData > protocols::environment::AutoCutDataOP

typedef utility::pointer::access_ptr< ClaimingMover > protocols::environment::ClaimingMoverAP

typedef utility::pointer::access_ptr< ClaimingMover const > protocols::environment::ClaimingMoverCAP

typedef utility::pointer::owning_ptr< ClaimingMover const > protocols::environment::ClaimingMoverCOP

typedef utility::pointer::owning_ptr< ClaimingMover > protocols::environment::ClaimingMoverOP

typedef utility::pointer::owning_ptr< DofUnlock const > protocols::environment::DofUnlockCOP

typedef utility::pointer::owning_ptr< DofUnlock > protocols::environment::DofUnlockOP

typedef utility::pointer::owning_ptr< EnvBeginMover const > protocols::environment::EnvBeginMoverCOP

typedef utility::pointer::owning_ptr< EnvBeginMover > protocols::environment::EnvBeginMoverOP

typedef utility::pointer::access_ptr< EnvClaimBroker > protocols::environment::EnvClaimBrokerAP

typedef utility::pointer::access_ptr< EnvClaimBroker const > protocols::environment::EnvClaimBrokerCAP

typedef utility::pointer::owning_ptr< EnvClaimBroker const > protocols::environment::EnvClaimBrokerCOP

typedef utility::pointer::owning_ptr< EnvClaimBroker > protocols::environment::EnvClaimBrokerOP

typedef utility::pointer::owning_ptr< EnvEndMover const > protocols::environment::EnvEndMoverCOP

typedef utility::pointer::owning_ptr< EnvEndMover > protocols::environment::EnvEndMoverOP

typedef utility::pointer::access_ptr< Environment > protocols::environment::EnvironmentAP

typedef utility::pointer::access_ptr< Environment const > protocols::environment::EnvironmentCAP

typedef utility::pointer::owning_ptr< Environment const > protocols::environment::EnvironmentCOP

typedef utility::pointer::owning_ptr< Environment > protocols::environment::EnvironmentOP

typedef utility::pointer::access_ptr< ProtectedConformation > protocols::environment::ProtectedConformationAP

typedef utility::pointer::access_ptr< ProtectedConformation const > protocols::environment::ProtectedConformationCAP

typedef utility::pointer::owning_ptr< ProtectedConformation const > protocols::environment::ProtectedConformationCOP

typedef utility::pointer::owning_ptr< ProtectedConformation > protocols::environment::ProtectedConformationOP

Function Documentation

template<typename T >

bool protocols::environment::compare_ctrl_strength	(	T const &	a,
		T const &	b
	)

template<typename T >

bool protocols::environment::compare_init_strength	(	T const &	a,
		T const &	b
	)

core::Size protocols::environment::construct_hash	(	ResidueElements const &	r_elems,
		JumpElements const &	j_elems,
		CutElements const &	c_elems,
		CutBiasElements const &	cb_elems
	)

References protocols::environment::claims::JumpElement::atom1, protocols::environment::claims::JumpElement::atom2, protocols::environment::claims::CutBiasElement::bias, protocols::environment::claims::JumpElement::has_physical_cut, protocols::environment::claims::ResidueElement::label, protocols::environment::claims::JumpElement::label, protocols::environment::claims::CutElement::p, protocols::environment::claims::CutBiasElement::p, protocols::environment::claims::JumpElement::p1, protocols::environment::claims::JumpElement::p2, protocols::environment::claims::CutElement::physical, and ss.

Referenced by protocols::environment::EnvClaimBroker::broker_fold_tree().

std::string protocols::environment::get_mover_name

(

std::stack< DofPassportCOP > const &

unlocks

)

Referenced by protocols::environment::ProtectedConformation::fail_verification().