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Rosetta Protocols
2014.16.56682
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This is the complete list of members for protocols::pockets::DarcParticleSwarmMinimizer, including all inherited members.
| DarcParticleSwarmMinimizer(NonPlaidFingerprint &nfp_in, PlaidFingerprint &pfp_in, core::Real const &missing_point_weight, core::Real const &steric_weight, core::Real const &extra_point_weight, core::optimization::Multivec p_min, core::optimization::Multivec p_max) | protocols::pockets::DarcParticleSwarmMinimizer | inline |
| DarcPSO_fp_compare_(core::Size particle_inx, core::Real const &missing_point_weight, core::Real const &steric_weight, core::Real const &extra_point_weight, std::vector< basic::gpu::float4 > &atoms, std::vector< basic::gpu::float4 > &atom_maxmin_phipsi) | protocols::pockets::DarcParticleSwarmMinimizer | private |
| extra_pt_ | protocols::pockets::DarcParticleSwarmMinimizer | private |
| fill_atom_arrays_(core::Size particle_inx, core::conformation::ResidueCOP ligand_rsd, std::vector< basic::gpu::float4 > &atoms, std::vector< basic::gpu::float4 > &atom_maxmin_phipsi, std::vector< basic::gpu::float4 > &ligand_maxmin_phipsi) | protocols::pockets::DarcParticleSwarmMinimizer | private |
| ligand_natoms_ | protocols::pockets::DarcParticleSwarmMinimizer | private |
| missing_pt_ | protocols::pockets::DarcParticleSwarmMinimizer | private |
| nfp_ | protocols::pockets::DarcParticleSwarmMinimizer | private |
| ParticleSwarmMinimizer(Multivec p_min, Multivec p_max) | core::optimization::ParticleSwarmMinimizer | |
| pfp_ | protocols::pockets::DarcParticleSwarmMinimizer | private |
| print_particles(ParticleOPs &particles, std::string header) | core::optimization::ParticleSwarmMinimizer | |
| run(Size num_cycles, Multifunc &f_fitness, Size num_part=50) | core::optimization::ParticleSwarmMinimizer | |
| run(Size num_cycles, Multifunc &f_fitness, Size num_part, Multivec init_values) | core::optimization::ParticleSwarmMinimizer | |
| run(Size num_cycles, Multifunc &f_fitness, ParticleOPs &particles) | core::optimization::ParticleSwarmMinimizer | |
| score_all_particles(core::optimization::Multifunc &f_fitness, core::optimization::ParticleOPs &particles) | protocols::pockets::DarcParticleSwarmMinimizer | virtual |
| steric_ | protocols::pockets::DarcParticleSwarmMinimizer | private |
| ~DarcParticleSwarmMinimizer() | protocols::pockets::DarcParticleSwarmMinimizer | inline |
| ~ParticleSwarmMinimizer() | core::optimization::ParticleSwarmMinimizer | virtual |
1.8.7