FullModelInfoSetupFromCommandLine.hh File Reference

#include <protocols/stepwise/full_model_info/FullModelInfoSetupFromCommandLine.fwd.hh>
#include <core/pose/Pose.fwd.hh>
#include <core/chemical/ResidueTypeSet.fwd.hh>
#include <core/kinematics/FoldTree.fwd.hh>
#include <core/types.hh>

Namespaces
	core
	core::pose
	core::pose::full_model_info

Functions
core::pose::PoseOP	core::pose::full_model_info::get_pdb_and_cleanup (std::string const input_file, core::chemical::ResidueTypeSetCAP rsd_set)
void	core::pose::full_model_info::get_other_poses (utility::vector1< pose::PoseOP > &other_poses, utility::vector1< std::string > const &other_files, core::chemical::ResidueTypeSetCAP rsd_set)
pose::PoseOP	core::pose::full_model_info::initialize_pose_and_other_poses_from_command_line (core::chemical::ResidueTypeSetCAP rsd_set)
void	core::pose::full_model_info::cleanup (pose::Pose &pose)
void	core::pose::full_model_info::fill_full_model_info_from_command_line (pose::Pose &pose)
void	core::pose::full_model_info::fill_full_model_info_from_command_line (vector1< PoseOP > &pose_ops)
void	core::pose::full_model_info::fill_full_model_info_from_command_line (pose::Pose &pose, vector1< PoseOP > &other_pose_ops)
void	core::pose::full_model_info::fill_full_model_info_from_command_line (vector1< Pose * > &pose_pointers)
void	core::pose::full_model_info::update_pose_fold_tree (pose::Pose &pose, vector1< Size > const &res_list, vector1< Size > const &extra_min_res, vector1< Size > const &sample_res, vector1< Size > const &jump_res, vector1< Size > const &root_res)
void	core::pose::full_model_info::define_chains (pose::Pose const &pose, vector1< vector1< Size > > &all_res_in_chain, vector1< vector1< Size > > &all_fixed_res_in_chain, vector1< Size > const &res_list, vector1< Size > const &moveable_res)
void	core::pose::full_model_info::setup_user_defined_jumps (vector1< Size > const &jump_res, vector1< Size > &jump_partners1, vector1< Size > &jump_partners2, vector1< vector1< bool > > &chain_connected, vector1< Size > const &res_list, vector1< vector1< Size > > const &all_res_in_chain)
Size	core::pose::full_model_info::get_chain (Size const i, vector1< vector1< Size > > const &all_res_in_chain)
void	core::pose::full_model_info::setup_jumps (vector1< Size > &jump_partners1, vector1< Size > &jump_partners2, vector1< vector1< bool > > &chain_connected, vector1< vector1< Size > > const &all_res_in_chain)
FoldTree	core::pose::full_model_info::get_tree (pose::Pose const &pose, vector1< Size > const &cuts, vector1< Size > const &jump_partners1, vector1< Size > const &jump_partners2)
FoldTree	core::pose::full_model_info::get_tree (Size const nres, vector1< Size > const &cuts, vector1< Size > const &jump_partners1, vector1< Size > const &jump_partners2, vector1< std::string > const &jump_atoms1, vector1< std::string > const &jump_atoms2)
void	core::pose::full_model_info::reroot (FoldTree &f, vector1< Size > const &res_list, vector1< Size > const &root_res)
void	core::pose::full_model_info::add_cutpoint_closed (pose::Pose &pose, vector1< Size > const &res_list, vector1< Size > const &cutpoint_closed)
void	core::pose::full_model_info::put_in_cutpoint (pose::Pose &pose, Size const i)
void	core::pose::full_model_info::add_virtual_sugar_res (pose::Pose &pose, vector1< Size > const &res_list, vector1< Size > const &virtual_sugar_res)

Detailed Description

Detailed:

Author

Rhiju Das, rhiju.nosp@m.@sta.nosp@m.nford.nosp@m..edu