| add_additional_task_operaration(core::pack::task::operation::TaskOperationOP task_operation) | protocols::docking::DockingHighRes | |
| apply(core::pose::Pose &pose) | protocols::docking::DockMCMProtocol | virtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::docking::DockMCMProtocol | virtual |
| create() | protocols::moves::Mover | virtual |
| dock_mcm_ | protocols::docking::DockMCMProtocol | private |
| DockingHighRes() | protocols::docking::DockingHighRes | |
| DockingHighRes(core::Size const rb_jump) | protocols::docking::DockingHighRes | |
| DockingHighRes(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn) | protocols::docking::DockingHighRes | |
| DockingHighRes(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack) | protocols::docking::DockingHighRes | |
| DockingHighRes(DockJumps const movable_jumps, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack) | protocols::docking::DockingHighRes | |
| DockingHighRes(DockingHighRes const &old_instance) | protocols::docking::DockingHighRes | |
| DockMCMProtocol() | protocols::docking::DockMCMProtocol | |
| DockMCMProtocol(core::Size const rb_jump) | protocols::docking::DockMCMProtocol | |
| DockMCMProtocol(core::Size const rb_jump, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack) | protocols::docking::DockMCMProtocol | |
| DockMCMProtocol(DockJumps const movable_jumps, core::scoring::ScoreFunctionOP scorefxn) | protocols::docking::DockMCMProtocol | |
| DockMCMProtocol(DockJumps const movable_jumps, core::scoring::ScoreFunctionOP scorefxn, core::scoring::ScoreFunctionOP scorefxn_pack) | protocols::docking::DockMCMProtocol | |
| filter_ | protocols::docking::DockMCMProtocol | private |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_additional_task_operarations() | protocols::docking::DockingHighRes | |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::docking::DockMCMProtocol | virtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_type() const | protocols::moves::Mover | inline |
| ignore_default_task() | protocols::docking::DockingHighRes | |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::docking::DockMCMProtocol | |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| movable_jumps() | protocols::docking::DockingHighRes | inline |
| movable_jumps() const | protocols::docking::DockingHighRes | inline |
| movemap_ | protocols::docking::DockMCMProtocol | private |
| movemap_reset_ | protocols::docking::DockMCMProtocol | private |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| num_of_first_cycle_ | protocols::docking::DockMCMProtocol | private |
| num_of_second_cycle_ | protocols::docking::DockMCMProtocol | private |
| operator<<(std::ostream &out, const DockMCMProtocol &dmp) | protocols::docking::DockMCMProtocol | friend |
| operator=(Mover const &other) | protocols::moves::Mover | |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| partners() | protocols::docking::DockingHighRes | inline |
| Pose typedef | protocols::moves::Mover | |
| PoseCOP typedef | protocols::moves::Mover | |
| Real typedef | protocols::docking::DockMCMProtocol | private |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| reset_status() | protocols::moves::Mover | |
| rt_min() | protocols::docking::DockingHighRes | inline |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| sc_min() | protocols::docking::DockingHighRes | inline |
| scorefxn() const | protocols::docking::DockingHighRes | |
| scorefxn_docking() const | protocols::docking::DockMCMProtocol | |
| scorefxn_pack() const | protocols::docking::DockingHighRes | |
| scorefxn_packing() const | protocols::docking::DockMCMProtocol | |
| set_additional_task_operarations(utility::vector1< core::pack::task::operation::TaskOperationOP > additional_task_operations) | protocols::docking::DockingHighRes | |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_filter(DockingHighResFilterOP filter) | protocols::docking::DockMCMProtocol | |
| set_first_cycle(Size const &num) | protocols::docking::DockMCMProtocol | |
| set_ignore_default_task(bool ignore_default_task) | protocols::docking::DockingHighRes | |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_interface_definition_task_operation(protocols::toolbox::task_operations::InterfaceTaskOperationOP interface_definition) | protocols::docking::DockingHighRes | |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_move_map(core::kinematics::MoveMapOP movemap) | protocols::docking::DockMCMProtocol | |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_partners(std::string partners) | protocols::docking::DockingHighRes | inline |
| set_rt_min(bool rt_min) | protocols::docking::DockingHighRes | inline |
| set_sc_min(bool sc_min) | protocols::docking::DockingHighRes | inline |
| set_scorefxn(core::scoring::ScoreFunctionOP scorefxn) | protocols::docking::DockingHighRes | |
| set_scorefxn_pack(core::scoring::ScoreFunctionOP scorefxn_pack) | protocols::docking::DockingHighRes | |
| set_second_cycle(Size const &num) | protocols::docking::DockMCMProtocol | |
| set_task_factory(core::pack::task::TaskFactoryCOP tf) | protocols::docking::DockingHighRes | |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| task_factory() | protocols::docking::DockingHighRes | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| tf2() | protocols::docking::DockingHighRes | protected |
| type() const | protocols::moves::Mover | inline |
| type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~DockingHighRes() | protocols::docking::DockingHighRes | virtual |
| ~DockMCMProtocol() | protocols::docking::DockMCMProtocol | |
| ~Mover() | protocols::moves::Mover | virtual |
1.8.7