This is the complete list of members for protocols::stepwise::sampling::general::StepWisePoseAligner, including all inherited members.

add_coordinate_constraints_from_map(pose::Pose &pose, pose::Pose const &reference_pose, std::map< id::AtomID, id::AtomID > const &superimpose_atom_id_map, core::Real const &constraint_x0, core::Real const &constraint_tol) const	protocols::stepwise::sampling::general::StepWisePoseAligner	private
add_to_atom_id_map_after_checks(std::map< id::AtomID, id::AtomID > &atom_id_map, std::string const &atom_name, Size const &n1, Size const &n2, pose::Pose const &pose1, pose::Pose const &pose2)	protocols::stepwise::sampling::general::StepWisePoseAligner	private
apply(pose::Pose &pose)	protocols::stepwise::sampling::general::StepWisePoseAligner
calc_rms_atom_id_map_	protocols::stepwise::sampling::general::StepWisePoseAligner	private
create_coordinate_constraints(pose::Pose &pose, Real const rmsd_screen)	protocols::stepwise::sampling::general::StepWisePoseAligner
get_rmsd_res_and_superimpose_res_in_pose(pose::Pose const &pose, utility::vector1< Size > &rmsd_res_in_pose, utility::vector1< Size > &superimpose_res_in_pose) const	protocols::stepwise::sampling::general::StepWisePoseAligner	private
natoms_rmsd() const	protocols::stepwise::sampling::general::StepWisePoseAligner	inline
output_atom_id_map(std::map< id::AtomID, id::AtomID > const &atom_id_map)	protocols::stepwise::sampling::general::StepWisePoseAligner	private
reference_pose_	protocols::stepwise::sampling::general::StepWisePoseAligner	private
reference_pose_local_	protocols::stepwise::sampling::general::StepWisePoseAligner	private
residue_is_bulged(pose::Pose const &pose, Size const &resid)	protocols::stepwise::sampling::general::StepWisePoseAligner	private
rmsd() const	protocols::stepwise::sampling::general::StepWisePoseAligner	inline
rmsd_	protocols::stepwise::sampling::general::StepWisePoseAligner	private
root_partition_res_	protocols::stepwise::sampling::general::StepWisePoseAligner	private
set_root_partition_res(utility::vector1< Size > const &setting)	protocols::stepwise::sampling::general::StepWisePoseAligner	inline
set_skip_bulges(bool const &setting)	protocols::stepwise::sampling::general::StepWisePoseAligner	inline
skip_bulges() const	protocols::stepwise::sampling::general::StepWisePoseAligner	inline
skip_bulges_	protocols::stepwise::sampling::general::StepWisePoseAligner	private
StepWisePoseAligner(pose::Pose const &reference_pose)	protocols::stepwise::sampling::general::StepWisePoseAligner
superimpose_at_fixed_res(pose::Pose &pose)	protocols::stepwise::sampling::general::StepWisePoseAligner	private
superimpose_atom_id_map_	protocols::stepwise::sampling::general::StepWisePoseAligner	private
~StepWisePoseAligner()	protocols::stepwise::sampling::general::StepWisePoseAligner