protocols::farna::RNA_DataReader Class Reference

#include <RNA_DataReader.hh>

Public Member Functions
virtual	~RNA_DataReader ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
	RNA_DataReader ()
void	initialize (core::pose::Pose &pose, std::string const rna_data_file)

Private Member Functions
void	read_burial_info (std::istringstream &line_stream, ObjexxFCL::FArray1D< bool > &array_to_fill)
void	read_data_info (std::istringstream &line_stream)
void	read_data_from_file (std::string const &rna_data_file)
void	setup_rna_data (core::pose::Pose &pose)

Private Attributes
core::scoring::rna::RNA_DataInfo	rna_data_info_
ObjexxFCL::FArray1D< bool >	backbone_burial_
ObjexxFCL::FArray1D< bool >	backbone_exposed_

Constructor & Destructor Documentation

protocols::farna::RNA_DataReader::~RNA_DataReader ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

protocols::farna::RNA_DataReader::RNA_DataReader

(

)

Member Function Documentation

void protocols::farna::RNA_DataReader::initialize	(	core::pose::Pose &	pose,
		std::string const	rna_data_file
	)

References nres, core::pose::Pose::total_residue(), and utility_exit_with_message.

Referenced by protocols::farna::RNA_DeNovoProtocol::initialize_movers().

void protocols::farna::RNA_DataReader::read_burial_info ( std::istringstream &  line_stream, ObjexxFCL::FArray1D< bool > &  array_to_fill  )

private

References utility_exit_with_message.

void protocols::farna::RNA_DataReader::read_data_from_file ( std::string const &  rna_data_file )

private

References utility::io::izstream::close(), getline(), tag, protocols::farna::tr, and utility_exit_with_message.

void protocols::farna::RNA_DataReader::read_data_info ( std::istringstream &  line_stream )

private

References core::chemical::rna::HOOGSTEEN, core::chemical::rna::SUGAR, utility_exit_with_message, core::chemical::rna::WATSON_CRICK, and weight.

void protocols::farna::RNA_DataReader::setup_rna_data ( core::pose::Pose &  pose )

private

References core::scoring::rna::nonconst_rna_scoring_info_from_pose(), and core::scoring::rna::RNA_ScoringInfo::rna_data_info().

Member Data Documentation

ObjexxFCL::FArray1D< bool> protocols::farna::RNA_DataReader::backbone_burial_

private

ObjexxFCL::FArray1D< bool> protocols::farna::RNA_DataReader::backbone_exposed_

private

core::scoring::rna::RNA_DataInfo protocols::farna::RNA_DataReader::rna_data_info_

private

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/farna/RNA_DataReader.hh
• symlinks/rosetta/src/protocols/farna/RNA_DataReader.cc