protocols::antibody::SnugDockProtocol Member List

This is the complete list of members for protocols::antibody::SnugDockProtocol, including all inherited members.

antibody_info_	protocols::antibody::SnugDockProtocol	private
apply(Pose &)	protocols::antibody::SnugDockProtocol	virtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)	protocols::moves::Mover	virtual
clear_info()	protocols::moves::Mover	inlinevirtual
clone() const	protocols::antibody::SnugDockProtocol	virtual
create()	protocols::moves::Mover	virtual
docking() const	protocols::antibody::SnugDockProtocol	private
docking_	protocols::antibody::SnugDockProtocol	mutableprivate
Filters_map typedef	protocols::moves::Mover
fresh_instance() const	protocols::antibody::SnugDockProtocol	virtual
get_additional_output()	protocols::moves::Mover	virtual
get_current_job() const	protocols::moves::Mover
get_current_tag() const	protocols::moves::Mover	inline
get_input_pose() const	protocols::moves::Mover
get_last_move_status() const	protocols::moves::Mover
get_name() const	protocols::antibody::SnugDockProtocol	virtual
get_native_pose() const	protocols::moves::Mover
get_type() const	protocols::moves::Mover	inline
h3_filter_	protocols::antibody::SnugDockProtocol	private
h3_filter_tolerance_	protocols::antibody::SnugDockProtocol	private
info()	protocols::moves::Mover	inlinevirtual
info() const	protocols::moves::Mover	inlinevirtual
init()	protocols::antibody::SnugDockProtocol	private
init_for_equal_operator_and_copy_constructor(SnugDockProtocol &lhs, SnugDockProtocol const &rhs)	protocols::antibody::SnugDockProtocol	private
init_options()	protocols::antibody::SnugDockProtocol	private
last_proposal_density_ratio()	protocols::moves::Mover	inlinevirtual
loop_refinement_method_	protocols::antibody::SnugDockProtocol	private
low_res_refine_cdr_h2_	protocols::antibody::SnugDockProtocol	private
low_res_refine_cdr_h3_	protocols::antibody::SnugDockProtocol	private
Mover()	protocols::moves::Mover
Mover(std::string const &type_name)	protocols::moves::Mover
Mover(Mover const &other)	protocols::moves::Mover
name()	protocols::moves::Mover	inlinestatic
operator<<(std::ostream &out, SnugDockProtocol const &snugdockprotocol)	protocols::antibody::SnugDockProtocol	friend
operator=(SnugDockProtocol const &rhs)	protocols::antibody::SnugDockProtocol
protocols::moves::Mover::operator=(Mover const &other)	protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)	protocols::moves::Mover	virtual
parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose)	protocols::moves::Mover	virtual
parse_state(SerializableState const &state)	protocols::moves::Mover	virtual
Pose typedef	protocols::moves::Mover
PoseCOP typedef	protocols::moves::Mover
register_options()	protocols::antibody::SnugDockProtocol	static
reinitialize_for_each_job() const	protocols::moves::Mover	virtual
reinitialize_for_new_input() const	protocols::antibody::SnugDockProtocol	virtual
reset_status()	protocols::moves::Mover
save_state(SerializableState &state)	protocols::moves::Mover	virtual
set_current_job(protocols::jobdist::BasicJobCOP job)	protocols::moves::Mover
set_current_tag(std::string const &new_tag)	protocols::moves::Mover	inline
set_input_pose(PoseCOP pose)	protocols::moves::Mover	virtual
set_last_move_status(MoverStatus status)	protocols::moves::Mover	protected
set_native_pose(PoseCOP pose)	protocols::moves::Mover	virtual
setup_loop_refinement_movers()	protocols::antibody::SnugDockProtocol	private
setup_objects(Pose const &pose)	protocols::antibody::SnugDockProtocol	private
show(std::ostream &out=std::cout) const	protocols::antibody::SnugDockProtocol	virtual
SnugDockProtocol()	protocols::antibody::SnugDockProtocol
SnugDockProtocol(SnugDockProtocol const &rhs)	protocols::antibody::SnugDockProtocol
Strings typedef	protocols::moves::Mover
TagCOP typedef	protocols::moves::Mover
test_move(Pose &pose)	protocols::moves::Mover	inlinevirtual
type() const	protocols::moves::Mover	inline
type(const std::string &type_in)	protocols::moves::Mover	inline
~Mover()	protocols::moves::Mover	virtual
~SnugDockProtocol()	protocols::antibody::SnugDockProtocol	virtual