| atom(core::Size const ) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| clone() const | protocols::constraints_additional::SequenceCoupling1BDConstraint | virtual |
| Conformation typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| ConstraintOP typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| EnergyMap typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| fill_f1_f2(AtomID const &, XYZ_Func const &, core::Vector &, core::Vector &, EnergyMap const &) const | protocols::constraints_additional::SequenceCoupling1BDConstraint | virtual |
| FuncFactory typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| natoms() const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| Pose typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| profile_mapping() const | core::scoring::constraints::SequenceProfileConstraint | |
| read_def(std::istream &, Pose const &, FuncFactory const &) | protocols::constraints_additional::SequenceCoupling1BDConstraint | virtual |
| remap_resid(SequenceMapping const &) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| remapped_clone(pose::Pose const &src, pose::Pose const &dest, id::SequenceMappingCOP map=NULL) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| residues() const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| score(XYZ_Func const &, EnergyMap const &, EnergyMap &) const | protocols::constraints_additional::SequenceCoupling1BDConstraint | virtual |
| seqpos() const | core::scoring::constraints::SequenceProfileConstraint | |
| seqpos(core::Size seqpos) | core::scoring::constraints::SequenceProfileConstraint | |
| sequence_profile() const | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceCoupling typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| SequenceCoupling1BDConstraint() | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| SequenceCoupling1BDConstraint(Pose const &, core::Size, SequenceProfileCOP profile) | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| SequenceCoupling1BDConstraint(core::Size, SequenceProfileCOP profile) | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| SequenceCouplingCOP typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| SequenceMapping typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| SequenceProfile typedef | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfileConstraint() | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfileConstraint(Pose const &, core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL) | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfileConstraint(core::Size, SequenceProfileCOP profile=NULL, core::id::SequenceMappingCOP mapping=NULL) | core::scoring::constraints::SequenceProfileConstraint | |
| SequenceProfileCOP typedef | core::scoring::constraints::SequenceProfileConstraint | |
| set_sequence_profile(SequenceProfileCOP profile, core::id::SequenceMappingCOP mapping=NULL) | core::scoring::constraints::SequenceProfileConstraint | |
| show(std::ostream &out) const | protocols::constraints_additional::SequenceCoupling1BDConstraint | virtual |
| show_def(std::ostream &, Pose const &) const | core::scoring::constraints::SequenceProfileConstraint | virtual |
| type() const | protocols::constraints_additional::SequenceCoupling1BDConstraint | inlinevirtual |
| weight(core::Real const w) | core::scoring::constraints::SequenceProfileConstraint | |
| weight() const | core::scoring::constraints::SequenceProfileConstraint | |
| XYZ_Func typedef | protocols::constraints_additional::SequenceCoupling1BDConstraint | |
| ~SequenceCoupling1BDConstraint() | protocols::constraints_additional::SequenceCoupling1BDConstraint | virtual |
| ~SequenceProfileConstraint() | core::scoring::constraints::SequenceProfileConstraint | virtual |