protocols::frag_picker::scores::ProfileScoreBlosum62 Member List

This is the complete list of members for protocols::frag_picker::scores::ProfileScoreBlosum62, including all inherited members.

blosum_matrix_	protocols::frag_picker::scores::ProfileScoreBlosum62	private
cached_score(FragmentCandidateOP, FragmentScoreMapOP)	protocols::frag_picker::scores::ProfileScoreBlosum62	virtual
cached_scores_id_	protocols::frag_picker::scores::ProfileScoreBlosum62	private
CachingScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)	protocols::frag_picker::scores::CachingScoringMethod	inline
clean_up()	protocols::frag_picker::scores::ProfileScoreBlosum62	inlinevirtual
clear()	protocols::frag_picker::scores::ProfileScoreBlosum62	private
do_caching(VallChunkOP)	protocols::frag_picker::scores::ProfileScoreBlosum62	virtual
FragmentScoringMethod(Size priority, Real lowest_acceptable_value, bool use_lowest, std::string name)	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_id()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_min_allowed_score()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_priority()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_score_name()	protocols::frag_picker::scores::FragmentScoringMethod	inline
get_use_lowest()	protocols::frag_picker::scores::FragmentScoringMethod	inline
id_	protocols::frag_picker::scores::FragmentScoringMethod	protected
lowest_acceptable_value_	protocols::frag_picker::scores::FragmentScoringMethod	protected
name_	protocols::frag_picker::scores::FragmentScoringMethod	protected
priority_	protocols::frag_picker::scores::FragmentScoringMethod	protected
ProfileScoreBlosum62(Size priority, Real lowest_acceptable_value, bool use_lowest, sequence::SequenceProfileOP query_profile, Size longest_vall_chunk)	protocols::frag_picker::scores::ProfileScoreBlosum62
query_profile_	protocols::frag_picker::scores::ProfileScoreBlosum62	private
score(FragmentCandidateOP, FragmentScoreMapOP)	protocols::frag_picker::scores::ProfileScoreBlosum62	virtual
scores_	protocols::frag_picker::scores::ProfileScoreBlosum62	protected
set_id(Size id)	protocols::frag_picker::scores::FragmentScoringMethod	inline
set_min_allowed_score(Real lowest_acceptable_value)	protocols::frag_picker::scores::FragmentScoringMethod	inline
use_lowest_	protocols::frag_picker::scores::FragmentScoringMethod	protected
~ProfileScoreBlosum62()	protocols::frag_picker::scores::ProfileScoreBlosum62