protocols::protein_interface_design::filters::StubScoreFilter Class Reference

#include <StubScoreFilterLoops.hh>

Public Member Functions
	StubScoreFilter ()
	default ctor More...
virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...
virtual void	report (std::ostream &out, core::pose::Pose const &pose) const
virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual protocols::filters::FilterOP	clone () const
virtual protocols::filters::FilterOP	fresh_instance () const
core::Real	compute (core::pose::Pose const &pose) const
virtual	~StubScoreFilter ()
void	stub_sets (utility::vector1< StubSetStubPos > const &stub_sets)
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
	StubScoreFilter ()
	default ctor More...
virtual bool	apply (core::pose::Pose const &pose) const
	Constructor with a single target residue. More...
virtual void	report (std::ostream &out, core::pose::Pose const &pose) const
virtual core::Real	report_sm (core::pose::Pose const &pose) const
	used to report filter internals through a score or silent file More...
virtual protocols::filters::FilterOP	clone () const
virtual protocols::filters::FilterOP	fresh_instance () const
core::Real	compute (core::pose::Pose const &pose) const
virtual	~StubScoreFilter ()
void	stub_sets (utility::vector1< StubSetStubPos > const &stub_sets)
void	parse_my_tag (utility::tag::TagCOP tag, basic::datacache::DataMap &, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)
Public Member Functions inherited from protocols::filters::Filter
	Filter ()
	Filter (std::string const &)
	Filter (Filter const &)
virtual	~Filter ()
virtual std::string	get_type () const
std::string	get_user_defined_name () const
void	set_user_defined_name (std::string const &name)
virtual void	clear ()
	used to clear internal variables if needed. Using fresh_instance is preferred since it's a pure virtual More...
virtual void	apply (core::io::serialization::PipeMap &pmap)
virtual void	score (core::io::serialization::PipeMap &pmap)
virtual core::Real	score (core::pose::Pose &pose)
virtual void	parse_def (utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks)
virtual std::string	name () const

Private Types
typedef protocols::filters::Filter	parent
typedef std::pair < protocols::hotspot_hashing::HotspotStubSetOP, std::pair < protocols::hotspot_hashing::HotspotStubOP, core::Size > >	StubSetStubPos
typedef protocols::filters::Filter	parent
typedef std::pair < protocols::hotspot_hashing::HotspotStubSetOP, std::pair < protocols::hotspot_hashing::HotspotStubOP, core::Size > >	StubSetStubPos

Private Attributes
utility::vector1< StubSetStubPos >	stub_sets_
core::Size	host_chain_
core::Real	cb_force_

Additional Inherited Members
Protected Attributes inherited from protocols::filters::Filter
std::string	scorename_

Member Typedef Documentation

typedef protocols::filters::Filter protocols::protein_interface_design::filters::StubScoreFilter::parent

private

typedef protocols::filters::Filter protocols::protein_interface_design::filters::StubScoreFilter::parent

private

typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > protocols::protein_interface_design::filters::StubScoreFilter::StubSetStubPos

private

typedef std::pair< protocols::hotspot_hashing::HotspotStubSetOP, std::pair< protocols::hotspot_hashing::HotspotStubOP, core::Size > > protocols::protein_interface_design::filters::StubScoreFilter::StubSetStubPos

private

Constructor & Destructor Documentation

protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter

(

)

default ctor

Referenced by clone(), and fresh_instance().

protocols::protein_interface_design::filters::StubScoreFilter::~StubScoreFilter ( )

virtual

protocols::protein_interface_design::filters::StubScoreFilter::StubScoreFilter

(

)

default ctor

virtual protocols::protein_interface_design::filters::StubScoreFilter::~StubScoreFilter ( )

virtual

Member Function Documentation

bool protocols::protein_interface_design::filters::StubScoreFilter::apply ( core::pose::Pose const &  pose ) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

References compute(), and protocols::protein_interface_design::filters::TR.

virtual bool protocols::protein_interface_design::filters::StubScoreFilter::apply ( core::pose::Pose const &  pose ) const

virtual

Constructor with a single target residue.

Implements protocols::filters::Filter.

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

References StubScoreFilter().

virtual protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::clone ( ) const

virtual

Implements protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute

(

core::pose::Pose const &

pose

)

const

References core::scoring::backbone_stub_constraint, protocols::protein_interface_design::movers::PlacementMinimizationMover::cb_force(), cb_force_, protocols::simple_filters::ScoreTypeFilter::compute(), protocols::protein_interface_design::movers::PlacementMinimizationMover::host_chain(), host_chain_, protocols::protein_interface_design::movers::make_stub_scorefxn(), protocols::protein_interface_design::movers::PlacementMinimizationMover::refresh_bbstub_constraints(), protocols::hotspot_hashing::remove_hotspot_constraints_from_pose(), runtime_assert, protocols::protein_interface_design::movers::PlacementMinimizationMover::stub_sets(), stub_sets_, and protocols::protein_interface_design::filters::TR.

Referenced by apply(), report(), and report_sm().

core::Real protocols::protein_interface_design::filters::StubScoreFilter::compute

(

core::pose::Pose const &

pose

)

const

protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

References StubScoreFilter().

virtual protocols::filters::FilterOP protocols::protein_interface_design::filters::StubScoreFilter::fresh_instance ( ) const

virtual

Implements protocols::filters::Filter.

void protocols::protein_interface_design::filters::StubScoreFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  , protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &    )

virtual

Reimplemented from protocols::filters::Filter.

void protocols::protein_interface_design::filters::StubScoreFilter::parse_my_tag ( utility::tag::TagCOP  tag, basic::datacache::DataMap &  data, protocols::filters::Filters_map const &  , protocols::moves::Movers_map const &  , core::pose::Pose const &  pose  )

virtual

Reimplemented from protocols::filters::Filter.

References cb_force_, host_chain_, protocols::protein_interface_design::movers::parse_stub_sets(), runtime_assert, stub_sets_, and protocols::protein_interface_design::filters::TR.

void protocols::protein_interface_design::filters::StubScoreFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

References compute().

virtual void protocols::protein_interface_design::filters::StubScoreFilter::report ( std::ostream &  out, core::pose::Pose const &  pose  ) const

virtual

Reimplemented from protocols::filters::Filter.

virtual core::Real protocols::protein_interface_design::filters::StubScoreFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

core::Real protocols::protein_interface_design::filters::StubScoreFilter::report_sm ( core::pose::Pose const &  ) const

virtual

used to report filter internals through a score or silent file

Reimplemented from protocols::filters::Filter.

References compute().

void protocols::protein_interface_design::filters::StubScoreFilter::stub_sets

(

utility::vector1< StubSetStubPos > const &

stub_sets

)

void protocols::protein_interface_design::filters::StubScoreFilter::stub_sets

(

utility::vector1< StubSetStubPos > const &

stub_sets

)

Member Data Documentation

core::Real protocols::protein_interface_design::filters::StubScoreFilter::cb_force_

private

Referenced by compute(), and parse_my_tag().

core::Size protocols::protein_interface_design::filters::StubScoreFilter::host_chain_

private

Referenced by compute(), and parse_my_tag().

utility::vector1< StubSetStubPos > protocols::protein_interface_design::filters::StubScoreFilter::stub_sets_

private

Referenced by compute(), and parse_my_tag().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/protein_interface_design/filters/StubScoreFilter.hh
• symlinks/rosetta/src/protocols/protein_interface_design/filters/StubScoreFilterLoops.hh
• symlinks/rosetta/src/protocols/protein_interface_design/filters/StubScoreFilter.cc