protocols::farna::FragmentLibrary Class Reference

#include <RNA_FragmentsClasses.hh>

Public Member Functions
virtual	~FragmentLibrary ()
	Automatically generated virtual destructor for class deriving directly from ReferenceCount. More...
core::Real	get_fragment_torsion (core::Size const num_torsion, Size const which_frag, core::Size const offset)
TorsionSet const	get_fragment_torsion_set (core::Size const which_frag)
void	add_torsion (TorsionSet const torsion_set)
void	add_torsion (FullAtomRNA_Fragments const &vall, core::Size const position, core::Size const size)
core::Size	get_align_depth ()
core::Real	get_fragment_torsion (core::Size const num_torsion, Size const which_frag, core::Size const offset)
TorsionSet const	get_fragment_torsion_set (core::Size const which_frag)
void	add_torsion (TorsionSet const torsion_set)
void	add_torsion (RNA_Fragments const &vall, core::Size const position, core::Size const size)
core::Size	get_align_depth ()

Private Attributes
std::vector< TorsionSet >	align_torsions_

Constructor & Destructor Documentation

protocols::farna::FragmentLibrary::~FragmentLibrary ( )

virtual

Automatically generated virtual destructor for class deriving directly from ReferenceCount.

Auto-generated virtual destructor

Member Function Documentation

void protocols::farna::FragmentLibrary::add_torsion

(

TorsionSet const

torsion_set

)

void protocols::farna::FragmentLibrary::add_torsion	(	RNA_Fragments const &	vall,
		core::Size const	position,
		core::Size const	size
	)

References j, protocols::farna::RNA_Fragments::name(), protocols::farna::TorsionSet::non_main_chain_sugar_coords, protocols::farna::RNA_Fragments::non_main_chain_sugar_coords(), protocols::farna::TorsionSet::non_main_chain_sugar_coords_defined, protocols::farna::RNA_Fragments::non_main_chain_sugar_coords_defined(), core::chemical::rna::NUM_RNA_TORSIONS(), protocols::farna::TorsionSet::secstruct, protocols::farna::RNA_Fragments::secstruct(), protocols::farna::TorsionSet::torsion_source_name, protocols::farna::TorsionSet::torsions, and protocols::farna::RNA_Fragments::torsions().

void protocols::farna::FragmentLibrary::add_torsion

(

TorsionSet const

torsion_set

)

Referenced by protocols::farna::RNA_Fragments::pick_fragment_library().

void protocols::farna::FragmentLibrary::add_torsion	(	FullAtomRNA_Fragments const &	vall,
		core::Size const	position,
		core::Size const	size
	)

References j, protocols::farna::FullAtomRNA_Fragments::name(), protocols::farna::TorsionSet::non_main_chain_sugar_coords, protocols::farna::FullAtomRNA_Fragments::non_main_chain_sugar_coords(), protocols::farna::TorsionSet::non_main_chain_sugar_coords_defined, protocols::farna::FullAtomRNA_Fragments::non_main_chain_sugar_coords_defined(), core::chemical::rna::NUM_RNA_TORSIONS(), protocols::farna::TorsionSet::secstruct, protocols::farna::FullAtomRNA_Fragments::secstruct(), protocols::farna::TorsionSet::torsion_source_name, protocols::farna::TorsionSet::torsions, and protocols::farna::FullAtomRNA_Fragments::torsions().

core::Size protocols::farna::FragmentLibrary::get_align_depth

(

)

Size protocols::farna::FragmentLibrary::get_align_depth

(

)

Referenced by protocols::farna::RNA_Fragments::pick_fragment_library().

core::Real protocols::farna::FragmentLibrary::get_fragment_torsion	(	core::Size const	num_torsion,
		Size const	which_frag,
		core::Size const	offset
	)

Real protocols::farna::FragmentLibrary::get_fragment_torsion	(	core::Size const	num_torsion,
		Size const	which_frag,
		core::Size const	offset
	)

TorsionSet const protocols::farna::FragmentLibrary::get_fragment_torsion_set

(

core::Size const

which_frag

)

TorsionSet const protocols::farna::FragmentLibrary::get_fragment_torsion_set

(

core::Size const

which_frag

)

Member Data Documentation

std::vector< TorsionSet > protocols::farna::FragmentLibrary::align_torsions_

private

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/farna/FullAtomRNA_Fragments.hh
• symlinks/rosetta/src/protocols/farna/RNA_FragmentsClasses.hh
• symlinks/rosetta/src/protocols/farna/FullAtomRNA_Fragments.cc
• symlinks/rosetta/src/protocols/farna/RNA_FragmentsClasses.cc