read_biounit.cc File Reference

#include <protocols/sic_dock/read_biounit.hh>
#include <basic/Tracer.hh>
#include <core/chemical/AtomType.hh>
#include <core/chemical/ChemicalManager.hh>
#include <core/import_pose/import_pose.hh>
#include <core/pose/PDBInfo.hh>
#include <core/pose/Pose.hh>
#include <core/pose/annotated_sequence.hh>
#include <core/pose/util.hh>
#include <core/scoring/Energies.hh>
#include <core/scoring/EnergyGraph.hh>
#include <core/scoring/ScoreFunctionFactory.hh>
#include <core/scoring/ScoreTypeManager.hh>
#include <core/scoring/dssp/Dssp.hh>
#include <core/scoring/hbonds/HBondOptions.hh>
#include <core/scoring/methods/EnergyMethodOptions.hh>
#include <core/scoring/packing/compute_holes_score.hh>
#include <core/scoring/rms_util.hh>
#include <core/scoring/sasa.hh>
#include <core/scoring/symmetry/SymmetricScoreFunction.hh>
#include <devel/init.hh>
#include <numeric/conversions.hh>
#include <numeric/model_quality/rms.hh>
#include <numeric/random/random.hh>
#include <numeric/xyz.functions.hh>
#include <numeric/xyz.io.hh>
#include <numeric/xyzVector.hh>

Namespaces
	protocols
	The instance of Loops contained by AbrelaxApplication should be replaced by a LoopsOP.
	protocols::sic_dock

Macros
#define	MAX_UINT16   65535
#define	MAX_UINT8   255

Typedefs
typedef numeric::xyzVector < core::Real >	Vec
typedef numeric::xyzMatrix < core::Real >	Mat

Functions
bool	protocols::sic_dock::read_biounit (std::string const &fname, core::pose::Pose &pose, int const max_res, bool const debug)
bool	protocols::sic_dock::read_biounit (std::string const &fname, core::pose::Pose &pose, utility::vector1< core::Real > &bfactors, utility::vector1< core::Real > &occupancy, int const max_res, bool const debug)
bool	protocols::sic_dock::read_biounit (string const &fname, Pose &pose, vector1< Real > &bfactors, vector1< Real > &occupancy, vector1< int > &pdbres, std::map< int, char > &pdbchain, int &nresmodel1, int const max_res, bool const debug)

Variables
static basic::Tracer	TR ("protocols.sic_dock.read_biounit")

Macro Definition Documentation

#define MAX_UINT16   65535

#define MAX_UINT8   255

Typedef Documentation

typedef numeric::xyzMatrix<core::Real> Mat

typedef numeric::xyzVector<core::Real> Vec

Variable Documentation

basic::Tracer TR("protocols.sic_dock.read_biounit")

static