protocols::stepwise::monte_carlo::rna Namespace Reference

Classes
class	AddMover
class	AddOrDeleteMover
class	DeleteMover
class	FromScratchMover
class	ResampleMover
class	RNA_AddDeleteMonteCarlo
class	RNA_O2PrimeMover
class	RNA_TorsionMover
class	StepWiseMonteCarlo
class	StepWiseMonteCarloOptions
class	TransientCutpointHandler

Typedefs
typedef utility::pointer::owning_ptr < AddMover >	AddMoverOP
typedef utility::pointer::owning_ptr < AddOrDeleteMover >	AddOrDeleteMoverOP
typedef utility::pointer::owning_ptr < DeleteMover >	DeleteMoverOP
typedef utility::pointer::owning_ptr < FromScratchMover >	FromScratchMoverOP
typedef utility::pointer::owning_ptr < FromScratchMover const >	FromScratchMoverCOP
typedef utility::pointer::owning_ptr < ResampleMover >	ResampleMoverOP
typedef utility::pointer::owning_ptr < ResampleMover const >	ResampleMoverCOP
typedef utility::pointer::owning_ptr < TransientCutpointHandler >	TransientCutpointHandlerOP
typedef utility::pointer::owning_ptr < TransientCutpointHandler const >	TransientCutpointHandlerCOP
typedef utility::pointer::owning_ptr < RNA_AddDeleteMonteCarlo >	RNA_AddDeleteMonteCarloOP
typedef utility::pointer::owning_ptr < RNA_O2PrimeMover >	RNA_O2PrimeMoverOP
typedef utility::pointer::owning_ptr < RNA_TorsionMover >	RNA_TorsionMoverOP
typedef utility::pointer::owning_ptr < StepWiseMonteCarlo >	StepWiseMonteCarloOP
typedef utility::pointer::owning_ptr < StepWiseMonteCarlo const >	StepWiseMonteCarloCOP
typedef utility::pointer::owning_ptr < StepWiseMonteCarloOptions >	StepWiseMonteCarloOptionsOP
typedef utility::pointer::owning_ptr < StepWiseMonteCarloOptions const >	StepWiseMonteCarloOptionsCOP

Functions
void	filter_for_proximity (pose::Pose const &pose, utility::vector1< Size > &partition_res, Size const center_res)

Typedef Documentation

typedef utility::pointer::owning_ptr< AddMover > protocols::stepwise::monte_carlo::rna::AddMoverOP

typedef utility::pointer::owning_ptr< AddOrDeleteMover > protocols::stepwise::monte_carlo::rna::AddOrDeleteMoverOP

typedef utility::pointer::owning_ptr< DeleteMover > protocols::stepwise::monte_carlo::rna::DeleteMoverOP

typedef utility::pointer::owning_ptr< FromScratchMover const > protocols::stepwise::monte_carlo::rna::FromScratchMoverCOP

typedef utility::pointer::owning_ptr< FromScratchMover > protocols::stepwise::monte_carlo::rna::FromScratchMoverOP

typedef utility::pointer::owning_ptr< ResampleMover const > protocols::stepwise::monte_carlo::rna::ResampleMoverCOP

typedef utility::pointer::owning_ptr< ResampleMover > protocols::stepwise::monte_carlo::rna::ResampleMoverOP

typedef utility::pointer::owning_ptr< RNA_AddDeleteMonteCarlo > protocols::stepwise::monte_carlo::rna::RNA_AddDeleteMonteCarloOP

typedef utility::pointer::owning_ptr< RNA_O2PrimeMover > protocols::stepwise::monte_carlo::rna::RNA_O2PrimeMoverOP

typedef utility::pointer::owning_ptr< RNA_TorsionMover > protocols::stepwise::monte_carlo::rna::RNA_TorsionMoverOP

typedef utility::pointer::owning_ptr< StepWiseMonteCarlo const > protocols::stepwise::monte_carlo::rna::StepWiseMonteCarloCOP

typedef utility::pointer::owning_ptr< StepWiseMonteCarlo > protocols::stepwise::monte_carlo::rna::StepWiseMonteCarloOP

typedef utility::pointer::owning_ptr< StepWiseMonteCarloOptions const > protocols::stepwise::monte_carlo::rna::StepWiseMonteCarloOptionsCOP

typedef utility::pointer::owning_ptr< StepWiseMonteCarloOptions > protocols::stepwise::monte_carlo::rna::StepWiseMonteCarloOptionsOP

typedef utility::pointer::owning_ptr< TransientCutpointHandler const > protocols::stepwise::monte_carlo::rna::TransientCutpointHandlerCOP

typedef utility::pointer::owning_ptr< TransientCutpointHandler > protocols::stepwise::monte_carlo::rna::TransientCutpointHandlerOP

Function Documentation

void protocols::stepwise::monte_carlo::rna::filter_for_proximity	(	pose::Pose const &	pose,
		utility::vector1< Size > &	partition_res,
		Size const	center_res
	)

References default_jump_atom(), utility::vector1< T, class >::has_value(), core::pose::Pose::residue(), runtime_assert, and core::conformation::Residue::xyz().

Referenced by protocols::stepwise::monte_carlo::rna::ResampleMover::slide_jump_randomly().