protocols::motif_hash::MotifRotamerSetOperation Class Reference

#include <motif_hash_stuff.hh>

Public Member Functions
	MotifRotamerSetOperation (Pose const &refpose, MotifHits const &motifs)
virtual	~MotifRotamerSetOperation ()
core::pack::rotamer_set::RotamerSetOperationOP	clone () const
void	alter_rotamer_set (core::pose::Pose const &pose, core::scoring::ScoreFunction const &sfxn, core::pack::task::PackerTask const &ptask, core::graph::GraphCOP packer_neighbor_graph, core::pack::rotamer_set::RotamerSet &rotamer_set)
virtual Real	increase_packer_residue_radius (core::pose::Pose const &pose, core::pack::task::PackerTaskCOP the_task, core::Size residue_in) const
void	dump_pdb (std::string const &fname) const

Private Attributes
MotifHits	motifs_
utility::vector1 < utility::vector1< PoseCOP > >	res1_poses_
utility::vector1 < utility::vector1< PoseCOP > >	res2_poses_

Constructor & Destructor Documentation

protocols::motif_hash::MotifRotamerSetOperation::MotifRotamerSetOperation	(	Pose const &	refpose,
		MotifHits const &	motifs
	)

References protocols::motif_hash::align_motif_pose_super(), protocols::motif_hash::ResPairMotif::fill_pose_with_motif(), protocols::motif_hash::MotifHit::motif, motifs_, res1_poses_, res2_poses_, protocols::motif_hash::MotifHit::residue1, and protocols::motif_hash::MotifHit::residue2.

Referenced by clone().

virtual protocols::motif_hash::MotifRotamerSetOperation::~MotifRotamerSetOperation ( )

inlinevirtual

Member Function Documentation

void protocols::motif_hash::MotifRotamerSetOperation::alter_rotamer_set ( core::pose::Pose const &  pose, core::scoring::ScoreFunction const &  sfxn, core::pack::task::PackerTask const &  ptask, core::graph::GraphCOP  packer_neighbor_graph, core::pack::rotamer_set::RotamerSet &  rotamer_set  )

virtual

Implements core::pack::rotamer_set::RotamerSetOperation.

References core::pack::rotamer_set::RotamerSet::add_rotamer(), res1_poses_, res2_poses_, and core::pack::rotamer_set::RotamerSet::resid().

core::pack::rotamer_set::RotamerSetOperationOP protocols::motif_hash::MotifRotamerSetOperation::clone ( ) const

inlinevirtual

Implements core::pack::rotamer_set::RotamerSetOperation.

References MotifRotamerSetOperation().

void protocols::motif_hash::MotifRotamerSetOperation::dump_pdb

(

std::string const &

fname

)

const

References utility::io::ozstream::close(), core::io::pdb::dump_pdb_residue(), nres, res1_poses_, and res2_poses_.

Real protocols::motif_hash::MotifRotamerSetOperation::increase_packer_residue_radius ( core::pose::Pose const &  pose, core::pack::task::PackerTaskCOP  the_task, core::Size  residue_in  ) const

virtual

Member Data Documentation

MotifHits protocols::motif_hash::MotifRotamerSetOperation::motifs_

private

Referenced by MotifRotamerSetOperation().

utility::vector1<utility::vector1<PoseCOP> > protocols::motif_hash::MotifRotamerSetOperation::res1_poses_

private

Referenced by alter_rotamer_set(), dump_pdb(), and MotifRotamerSetOperation().

utility::vector1<utility::vector1<PoseCOP> > protocols::motif_hash::MotifRotamerSetOperation::res2_poses_

private

Referenced by alter_rotamer_set(), dump_pdb(), and MotifRotamerSetOperation().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/motif_hash/motif_hash_stuff.hh
• symlinks/rosetta/src/protocols/motif_hash/motif_hash_stuff.cc