Rosetta Protocols  2014.16.56682
protocols::flexpep_docking::FlexPepDockingProtocol Member List

This is the complete list of members for protocols::flexpep_docking::FlexPepDockingProtocol, including all inherited members.

addLowResStatistics(core::pose::Pose const &start_pose, core::pose::Pose &pose_after_lowres) const protocols::flexpep_docking::FlexPepDockingProtocolprivate
allprotein_tf_protocols::flexpep_docking::FlexPepDockingProtocolprivate
apply(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolvirtual
protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap)protocols::moves::Movervirtual
backrub_move(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
calcMetrics(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
check_filters(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
clear_info()protocols::moves::Moverinlinevirtual
clone() const protocols::flexpep_docking::FlexPepDockingProtocolvirtual
create()protocols::moves::Movervirtual
design_mover_protocols::flexpep_docking::FlexPepDockingProtocolprivate
design_task_protocols::flexpep_docking::FlexPepDockingProtocolprivate
extend_peptide(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
Filters_map typedefprotocols::moves::Mover
flags_protocols::flexpep_docking::FlexPepDockingProtocolprivate
FlexPepDockingProtocol(Size const rb_jump_in=1)protocols::flexpep_docking::FlexPepDockingProtocol
FlexPepDockingProtocol(Size const rb_jump_in, bool const fullatom, bool const view=false)protocols::flexpep_docking::FlexPepDockingProtocol
fpdock_metrics_protocols::flexpep_docking::FlexPepDockingProtocolprivate
fresh_instance() const protocols::moves::Movervirtual
fullatom_protocols::flexpep_docking::FlexPepDockingProtocolprivate
get_additional_output()protocols::moves::Movervirtual
get_current_job() const protocols::moves::Mover
get_current_tag() const protocols::moves::Moverinline
get_input_pose() const protocols::moves::Mover
get_last_move_status() const protocols::moves::Mover
get_name() const protocols::flexpep_docking::FlexPepDockingProtocolvirtual
get_native_pose() const protocols::moves::Mover
get_type() const protocols::moves::Moverinline
hires_fpdock_protocol(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
if_metrics_protocols::flexpep_docking::FlexPepDockingProtocolprivate
info()protocols::moves::Moverinlinevirtual
info() const protocols::moves::Moverinlinevirtual
interface_packer_protocols::flexpep_docking::FlexPepDockingProtocolprivate
interface_tf_protocols::flexpep_docking::FlexPepDockingProtocolprivate
is_fail_protocols::flexpep_docking::FlexPepDockingProtocolprivate
is_trimmed_loops_protocols::flexpep_docking::FlexPepDockingProtocolprivate
last_proposal_density_ratio()protocols::moves::Moverinlinevirtual
loop_relax_mover_protocols::flexpep_docking::FlexPepDockingProtocolprivate
markNativeInterface(ObjexxFCL::FArray1D_bool &superpos_partner, ObjexxFCL::FArray1D_bool &native_interface_residues) const protocols::flexpep_docking::FlexPepDockingProtocolprivate
mc_protocols::flexpep_docking::FlexPepDockingProtocolprivate
minimize_only(core::pose::Pose &pose, const std::string &min_type, const float min_func_tol)protocols::flexpep_docking::FlexPepDockingProtocolprivate
movemap_protocols::flexpep_docking::FlexPepDockingProtocolprivate
movemap_minimizer_protocols::flexpep_docking::FlexPepDockingProtocolprivate
Mover()protocols::moves::Mover
Mover(std::string const &type_name)protocols::moves::Mover
Mover(Mover const &other)protocols::moves::Mover
name()protocols::moves::Moverinlinestatic
nres_peptide_protocols::flexpep_docking::FlexPepDockingProtocolprivate
nres_receptor_protocols::flexpep_docking::FlexPepDockingProtocolprivate
operator=(Mover const &other)protocols::moves::Mover
parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache)protocols::moves::Movervirtual
parse_my_tag(utility::tag::TagCOP tag, basic::datacache::DataMap &data, protocols::filters::Filters_map const &, protocols::moves::Movers_map const &, core::pose::Pose const &)protocols::flexpep_docking::FlexPepDockingProtocolvirtual
parse_state(SerializableState const &state)protocols::moves::Movervirtual
peptide_random_loop_model(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
polyAla(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
Pose typedefprotocols::moves::Mover
PoseCOP typedefprotocols::moves::Mover
prepack_only(core::pose::Pose &pose, bool ppk_receptor, bool ppk_peptide)protocols::flexpep_docking::FlexPepDockingProtocolprivate
random_peptide_phi_psi_perturbation(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
random_rb_pert(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
randomlySlidePeptideJump(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
rb_jump_protocols::flexpep_docking::FlexPepDockingProtocolprivate
receptor_protector_oper_protocols::flexpep_docking::FlexPepDockingProtocolprivate
register_options()protocols::moves::Moverinlinestatic
reinitialize_for_each_job() const protocols::moves::Movervirtual
reinitialize_for_new_input() const protocols::moves::Movervirtual
reset_status()protocols::moves::Mover
rigidbody_monte_carlo_minimize(core::pose::Pose &pose, const int cycles, const std::string &min_type, const float trans_magnitude, const float rot_magnitude, const float minimization_threshold, const float func_tol)protocols::flexpep_docking::FlexPepDockingProtocolprivate
save_state(SerializableState &state)protocols::moves::Movervirtual
scorefxn_protocols::flexpep_docking::FlexPepDockingProtocolprivate
scorefxn_lowres_protocols::flexpep_docking::FlexPepDockingProtocolprivate
set_allowed_moves()protocols::flexpep_docking::FlexPepDockingProtocolprivate
set_current_job(protocols::jobdist::BasicJobCOP job)protocols::moves::Mover
set_current_tag(std::string const &new_tag)protocols::moves::Moverinline
set_default()protocols::flexpep_docking::FlexPepDockingProtocol
set_input_pose(PoseCOP pose)protocols::moves::Movervirtual
set_last_move_status(MoverStatus status)protocols::moves::Moverprotected
set_native_pose(PoseCOP pose)protocols::moves::Movervirtual
set_receptor_constraints(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
setup_foldtree(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
shear_moves(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
show(std::ostream &output=std::cout) const protocols::moves::Movervirtual
small_moves(core::pose::Pose &pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
storeJobStatistics(core::pose::Pose const &start_pose, core::pose::Pose &pose_after_lowres, core::pose::Pose &final_pose)protocols::flexpep_docking::FlexPepDockingProtocolprivate
Strings typedefprotocols::moves::Mover
TagCOP typedefprotocols::moves::Mover
test_move(Pose &pose)protocols::moves::Moverinlinevirtual
torsions_monte_carlo_minimize(core::pose::Pose &pose, const int cycles, const std::string &min_type, const float minimization_threshold, const float min_func_tol)protocols::flexpep_docking::FlexPepDockingProtocolprivate
type() const protocols::moves::Moverinline
type(const std::string &type_in)protocols::moves::Moverinline
view(bool view_in)protocols::flexpep_docking::FlexPepDockingProtocolinline
view_protocols::flexpep_docking::FlexPepDockingProtocolprivate
~FlexPepDockingProtocol()protocols::flexpep_docking::FlexPepDockingProtocol
~Mover()protocols::moves::Movervirtual
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