protocols::rotamer_recovery::RotamerRecovery Class Reference

#include <RotamerRecovery.hh>

Public Member Functions
	RotamerRecovery ()
	default constructor More...
	RotamerRecovery (RRProtocolOP protocol, RRComparerOP comparer, RRReporterOP reporter)
	specify comparer and reporter More...
virtual	~RotamerRecovery ()
	destructor More...
	RotamerRecovery (RotamerRecovery const &src)
	copy constructor More...
virtual void	reset_recovery ()
virtual void	register_options () const
core::Real	run (core::pose::Pose const &pose, core::scoring::ScoreFunction const &score_function, core::pack::task::PackerTask const &packer_task)
void	init_rotamer_recovery_with_options (RotamerRecovery &rotamer_recovery)
void	init_with_options ()
void	set_ignore_unrecognized_res (bool const ignore_unrecognized_res)
bool	get_ignore_unrecognized_res ()
virtual void	show (std::ostream &out) const
virtual void	show ()
virtual core::Real	recovery_rate () const

Private Attributes
RRProtocolOP	protocol_
RRComparerOP	comparer_
RRReporterOP	reporter_
bool	ignore_unrecognized_res_

Constructor & Destructor Documentation

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery

(

)

default constructor

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery	(	RRProtocolOP	protocol,
		RRComparerOP	comparer,
		RRReporterOP	reporter
	)

specify comparer and reporter

References comparer_, protocol_, and reporter_.

protocols::rotamer_recovery::RotamerRecovery::~RotamerRecovery ( )

virtual

destructor

protocols::rotamer_recovery::RotamerRecovery::RotamerRecovery

(

RotamerRecovery const &

src

)

copy constructor

Member Function Documentation

bool protocols::rotamer_recovery::RotamerRecovery::get_ignore_unrecognized_res

(

)

References ignore_unrecognized_res_.

void protocols::rotamer_recovery::RotamerRecovery::init_rotamer_recovery_with_options

(

RotamerRecovery &

rotamer_recovery

)

References basic::options::OptionKeys::in::ignore_unrecognized_res, ignore_unrecognized_res, basic::options::option, option, set_ignore_unrecognized_res(), and user.

Referenced by init_with_options().

void protocols::rotamer_recovery::RotamerRecovery::init_with_options

(

)

References init_rotamer_recovery_with_options().

Real protocols::rotamer_recovery::RotamerRecovery::recovery_rate ( ) const

virtual

References reporter_.

void protocols::rotamer_recovery::RotamerRecovery::register_options ( ) const

virtual

References utility::options::OptionCollection::add_relevant(), ignore_unrecognized_res, basic::options::OptionKeys::in::ignore_unrecognized_res, option, and basic::options::option.

Referenced by protocols::rotamer_recovery::RotamerRecoveryMover::register_options().

void protocols::rotamer_recovery::RotamerRecovery::reset_recovery ( )

virtual

References reporter_.

Real protocols::rotamer_recovery::RotamerRecovery::run	(	core::pose::Pose const &	pose,
		core::scoring::ScoreFunction const &	score_function,
		core::pack::task::PackerTask const &	packer_task
	)

References comparer_, protocol_, and reporter_.

Referenced by protocols::rotamer_recovery::RotamerRecoveryMover::apply(), and protocols::features::RotamerRecoveryFeatures::report_features().

void protocols::rotamer_recovery::RotamerRecovery::set_ignore_unrecognized_res

(

bool const

ignore_unrecognized_res

)

References ignore_unrecognized_res_.

Referenced by init_rotamer_recovery_with_options().

void protocols::rotamer_recovery::RotamerRecovery::show ( std::ostream &  out ) const

virtual

References reporter_.

Referenced by protocols::rotamer_recovery::RotamerRecoveryMover::show().

void protocols::rotamer_recovery::RotamerRecovery::show ( )

virtual

References reporter_.

Member Data Documentation

RRComparerOP protocols::rotamer_recovery::RotamerRecovery::comparer_

private

Referenced by RotamerRecovery(), and run().

bool protocols::rotamer_recovery::RotamerRecovery::ignore_unrecognized_res_

private

Referenced by get_ignore_unrecognized_res(), and set_ignore_unrecognized_res().

RRProtocolOP protocols::rotamer_recovery::RotamerRecovery::protocol_

private

Referenced by RotamerRecovery(), and run().

RRReporterOP protocols::rotamer_recovery::RotamerRecovery::reporter_

private

Referenced by recovery_rate(), reset_recovery(), RotamerRecovery(), run(), and show().

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The documentation for this class was generated from the following files:

• symlinks/rosetta/src/protocols/rotamer_recovery/RotamerRecovery.hh
• symlinks/rosetta/src/protocols/rotamer_recovery/RotamerRecovery.cc