| apply(core::pose::Pose &, core::Size const ) | protocols::rotamer_sampler::copy_dofs::CopyDofRotamer | virtual |
| protocols::rotamer_sampler::RotamerSized::apply(core::pose::Pose &pose) | protocols::rotamer_sampler::RotamerSized | inlinevirtual |
| protocols::moves::Mover::apply(core::io::serialization::PipeMap &pmap) | protocols::moves::Mover | virtual |
| clear_info() | protocols::moves::Mover | inlinevirtual |
| clone() const | protocols::moves::Mover | virtual |
| copy_dof_movers_ | protocols::rotamer_sampler::copy_dofs::CopyDofRotamer | protected |
| CopyDofRotamer(utility::vector1< core::pose::PoseOP > const &pose_list, std::map< Size, Size > const &res_map, core::pose::Pose const &starting_pose) | protocols::rotamer_sampler::copy_dofs::CopyDofRotamer | |
| CopyDofRotamer(utility::vector1< core::pose::PoseOP > const &pose_list, std::map< Size, Size > const &res_map) | protocols::rotamer_sampler::copy_dofs::CopyDofRotamer | |
| create() | protocols::moves::Mover | virtual |
| fast_forward() | protocols::rotamer_sampler::RotamerSized | inlinevirtual |
| Filters_map typedef | protocols::moves::Mover | |
| fresh_instance() const | protocols::moves::Mover | virtual |
| get_additional_output() | protocols::moves::Mover | virtual |
| get_current_job() const | protocols::moves::Mover | |
| get_current_tag() const | protocols::moves::Mover | inline |
| get_input_pose() const | protocols::moves::Mover | |
| get_last_move_status() const | protocols::moves::Mover | |
| get_name() const | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | inlinevirtual |
| get_native_pose() const | protocols::moves::Mover | |
| get_residue_at_origin() | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | |
| get_residue_at_origin_with_matching_type(Residue const &rsd_in) | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | |
| get_type() const | protocols::moves::Mover | inline |
| id() const | protocols::rotamer_sampler::RotamerSized | inline |
| id_ | protocols::rotamer_sampler::RotamerSized | protected |
| info() | protocols::moves::Mover | inlinevirtual |
| info() const | protocols::moves::Mover | inlinevirtual |
| init() | protocols::rotamer_sampler::RotamerSized | virtual |
| initialize_residues() | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | private |
| initialize_residues_for_type(Residue const &rsd_in) | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | private |
| is_init() const | protocols::rotamer_sampler::RotamerBase | inlineprotected |
| last_proposal_density_ratio() | protocols::moves::Mover | inlinevirtual |
| Mover() | protocols::moves::Mover | |
| Mover(std::string const &type_name) | protocols::moves::Mover | |
| Mover(Mover const &other) | protocols::moves::Mover | |
| name() | protocols::moves::Mover | inlinestatic |
| not_end() const | protocols::rotamer_sampler::RotamerSized | virtual |
| operator++() | protocols::rotamer_sampler::RotamerSized | virtual |
| operator=(Mover const &other) | protocols::moves::Mover | |
| original_type_ | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | private |
| parse_def(utility::lua::LuaObject const &def, utility::lua::LuaObject const &score_fxns, utility::lua::LuaObject const &tasks, MoverCacheSP cache) | protocols::moves::Mover | virtual |
| parse_my_tag(TagCOP tag, basic::datacache::DataMap &data, Filters_map const &filters, Movers_map const &movers, Pose const &pose) | protocols::moves::Mover | virtual |
| parse_state(SerializableState const &state) | protocols::moves::Mover | virtual |
| Pose typedef | protocols::moves::Mover | |
| pose_list_ | protocols::rotamer_sampler::copy_dofs::CopyDofRotamer | protected |
| PoseCOP typedef | protocols::moves::Mover | |
| random() const | protocols::rotamer_sampler::RotamerBase | inlinevirtual |
| register_options() | protocols::moves::Mover | inlinestatic |
| reinitialize_for_each_job() const | protocols::moves::Mover | virtual |
| reinitialize_for_new_input() const | protocols::moves::Mover | virtual |
| representative_seqpos() const | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | inline |
| representative_seqpos_ | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | private |
| reset() | protocols::rotamer_sampler::RotamerSized | virtual |
| reset_status() | protocols::moves::Mover | |
| ResidueAlternativeRotamer(ResidueAlternativeSet const &residue_alternative_set, core::pose::Pose const &starting_pose) | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | |
| ResidueAlternativeRotamer(ResidueAlternativeSet const &residue_alternative_set) | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | |
| ResidueAlternativeRotamer(utility::vector1< core::pose::PoseOP > const &pose_list, std::map< Size, Size > const &res_map, Size const representative_seqpos, core::pose::Pose const &starting_pose) | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | |
| ResidueAlternativeRotamer(utility::vector1< core::pose::PoseOP > const &pose_list, std::map< Size, Size > const &res_map, Size const representative_seqpos) | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | |
| ResidueAlternativeRotamer(utility::vector1< core::pose::PoseOP > const &pose_list, Size const seqpos) | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | |
| residues_for_each_type_ | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | private |
| RotamerBase() | protocols::rotamer_sampler::RotamerBase | inline |
| RotamerSized() | protocols::rotamer_sampler::RotamerSized | |
| save_state(SerializableState &state) | protocols::moves::Mover | virtual |
| set_and_reinit(T ¶ms, T const &setting) | protocols::rotamer_sampler::RotamerBase | inlineprotected |
| set_current_job(protocols::jobdist::BasicJobCOP job) | protocols::moves::Mover | |
| set_current_tag(std::string const &new_tag) | protocols::moves::Mover | inline |
| set_id(Size const setting) | protocols::rotamer_sampler::RotamerSized | inlinevirtual |
| set_init(bool const setting) | protocols::rotamer_sampler::RotamerBase | inlineprotected |
| set_input_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_last_move_status(MoverStatus status) | protocols::moves::Mover | protected |
| set_native_pose(PoseCOP pose) | protocols::moves::Mover | virtual |
| set_random(bool const setting) | protocols::rotamer_sampler::RotamerBase | inlinevirtual |
| show(std::ostream &output=std::cout) const | protocols::moves::Mover | virtual |
| simple_res_map(Size const i) | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | private |
| size() const | protocols::rotamer_sampler::copy_dofs::CopyDofRotamer | inlinevirtual |
| Strings typedef | protocols::moves::Mover | |
| TagCOP typedef | protocols::moves::Mover | |
| test_move(Pose &pose) | protocols::moves::Mover | inlinevirtual |
| TorsionList typedef | protocols::rotamer_sampler::RotamerBase | |
| type() const | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | inlinevirtual |
| protocols::moves::Mover::type(const std::string &type_in) | protocols::moves::Mover | inline |
| ~Mover() | protocols::moves::Mover | virtual |
| ~ResidueAlternativeRotamer() | protocols::rotamer_sampler::copy_dofs::ResidueAlternativeRotamer | |
| ~RotamerBase() | protocols::rotamer_sampler::RotamerBase | inlinevirtual |
| ~RotamerSized() | protocols::rotamer_sampler::RotamerSized | virtual |
1.8.7